Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., PAS domain S-box from Enterobacter asburiae PDN3

 Score =  237 bits (605), Expect = 7e-67
 Identities = 148/507 (29%), Positives = 247/507 (48%), Gaps = 31/507 (6%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR+N PVT +   L+  + ++STT   SHITY N  F++ SG+ EE L+G+PHN++RHPD
Sbjct: 1   MRRNSPVTQNEYLLNDGSTLMSTTDTKSHITYANSAFIEASGYKEEHLLGEPHNLIRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MP  AF  MW TL+ G +W GLVKNR  NGDHYWV A   P+ + G +  Y SVR  P  
Sbjct: 61  MPAEAFGDMWFTLQQGETWTGLVKNRRHNGDHYWVRANVTPVWQGGSLTGYISVRNIPAR 120

Query: 125 SHVQAAEKAYAQLRNGKNILPKIRLGFHWKLILLVWGSLFASIAIVSLIY----PSALMS 180
             + A+EK YA++RN +    +   G   +  L  + SLF  ++    I+     +AL+S
Sbjct: 121 EEIAASEKLYAKVRNNELKHYRFYKGLLVRRGLFSFMSLFKCLSTSKRIHLGIATTALLS 180

Query: 181 ILFLTLLVGSITTLGITYLLV-------------PMKRLIQSYCKDSDNPLSQVLYTGRS 227
            L + L    +   G   LL              P+K ++Q          +   +  R 
Sbjct: 181 CLAVYLFPDKLVQSGSLVLLFTSLAYYLHAQIARPVKSIVQQMQSVVSGRKTDYYHFDRI 240

Query: 228 DEFGQLEFALRMAQAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAETEQVA 287
           D+ G +   +  +    ++++  +G   + +   +  +          + E     +Q A
Sbjct: 241 DDIGLMMRLVNQSGLNLNSLVDDVGAQISGIGTISQQVAKEGAALQTRSEETADFLQQTA 300

Query: 288 TAINEMAASIQEVATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQAKQVIH 347
           +A+ E+A+++++ A  AK A   ++        G+ ++ +    +  +  + SQ      
Sbjct: 301 SAVEEIASAVKQTAETAKEATEMADRTRDSAHRGEAMMKETIGMMQSVSQDNSQ------ 354

Query: 348 ELEEHSNDISKVLEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLAARTQQ 407
                   I  ++ VI  IA QTN+LALNAA+EAARAGE+GRGFAVVA EVR LA  +  
Sbjct: 355 --------IVDIISVIDRIAFQTNILALNAAVEAARAGEAGRGFAVVAAEVRNLAQHSAT 406

Query: 408 STMDIQRMIDTLQGRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDITGMSVQ 467
           +  +I+ +I+         V  +E +  Q  + ++   + +  +  IG    + T     
Sbjct: 407 AAKEIKALIEKNVASVNAGVEKVEQTETQLTVMIDNVLRVSSLIKEIGHATQEQTQALTL 466

Query: 468 MATAVDQQSAVSDEINHSISNIRMAAD 494
           +  ++ +  A++      + N+  AA+
Sbjct: 467 INASISRIGAMTHNNTGMVDNVTHAAN 493