Pairwise Alignments

Query, 529 a.a., chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 515 a.a., PAS domain-containing protein from Dickeya dianthicola ME23

 Score =  244 bits (623), Expect = 6e-69
 Identities = 158/542 (29%), Positives = 257/542 (47%), Gaps = 50/542 (9%)

Query: 5   MRKNLPVTGHNIELSSSTNILSTTTPDSHITYVNPDFLKISGFAEEELIGQPHNMVRHPD 64
           MR N PVT           ++S T  +SHI Y N  F+++SGF  +E+ GQPHN VRHPD
Sbjct: 1   MRNNQPVTQREYIFDKDATLMSVTDVNSHIVYANDAFIQVSGFEPDEIDGQPHNFVRHPD 60

Query: 65  MPPAAFAHMWSTLKSGRSWMGLVKNRCKNGDHYWVSAFAMPIIKNGKVVEYQSVRTKPEP 124
           MP  AF  MW TLK    W  LVKNR KNGDHYWV A A+PI++ G+   Y SVRT+P  
Sbjct: 61  MPVEAFRDMWQTLKQQEPWTALVKNRRKNGDHYWVRANAVPIVRQGRTTGYMSVRTQPSR 120

Query: 125 SHVQAAEKAYAQLRN--GKN---------------ILPKIRL-GFHWKLILLVWGSLFAS 166
             V AAE  Y  +R+  GKN               +  +++L    W+L  L+  +   S
Sbjct: 121 QEVDAAEALYQSMRHDQGKNLKLHKGVLFRAGLTGLFSRLKLISIRWRLRGLIMLTALIS 180

Query: 167 IAIVSLIYPSA----LMSILFLTLLVGSITTLGITYLLVPMKRLIQSYCKDSDNPLSQVL 222
             +   I+ +      +S  F+T ++  +  L    L+ P++ + Q     +   ++ + 
Sbjct: 181 YVVFWTIHGNVDADFYISSAFMTGMMLLLDGLLEWQLIKPIEMVKQQALNIATGNVNTID 240

Query: 223 YTGRSDEFGQLEFALRMAQAETSAVIGRIGDASNQLNKFANDLLHNIEKSNILTSEQQAE 282
           Y   +DE G ++ A+         ++  I      +   +++L H  E  +       A 
Sbjct: 241 YGNHADEIGTIQRAIGQLGLMFRWLVDDISTQVLNIRSASDELAHGSEDMSDHAERTAAN 300

Query: 283 TEQVATAINEMAASIQEVATGAKHAANSSESANHETISGQQIVSQASQSITELEHEVSQA 342
            +Q A A+N++  ++Q   T    A+  + +A    ISG ++              + + 
Sbjct: 301 VQQTAAAMNQINTTVQTNTTTTSEASQQAATACDAAISGGRV--------------IGEM 346

Query: 343 KQVIHELEEHSNDISKVLEVIRSIADQTNLLALNAAIEAARAGESGRGFAVVADEVRGLA 402
           ++ +  +   S  I+ +  +I +IA QTN+LALNAA+EAARAGE G+GFAVVA EVR LA
Sbjct: 347 EKTMDSIVASSEKIAGITSIIDNIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLA 406

Query: 403 ARTQQSTMDIQRMIDTLQGRAKLAVAVMEHSSQQALLSVEQAQQAADALTGIGKRVSDIT 462
            R+  +  +I+++I              E S +Q        + A D+   I  RV+ ++
Sbjct: 407 QRSASAANEIKQLI--------------ESSVEQVRYGSTHVRDAGDSTQNIVTRVNSVS 452

Query: 463 GMSVQMATAVDQQSAVSDEINHSISNIRMAADTNVDNGKINAKCAEGVAGLSHNLSELAQ 522
            +   +A +  +Q+    EI  ++  +      N       A+ ++ +   +H L +   
Sbjct: 453 QLISHIADSTKEQTIGLSEIGRAVEELEQITQKNASQVNACAQASDQLKLQAHRLEQALH 512

Query: 523 QF 524
            F
Sbjct: 513 VF 514