Pairwise Alignments

Query, 174 a.a., type II secretion system protein from Vibrio cholerae E7946 ATCC 55056

Subject, 170 a.a., Serogroup C1 from Alteromonas macleodii MIT1002

 Score = 76.6 bits (187), Expect = 2e-19
 Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 23/179 (12%)

Query: 1   MSKNQGFTLIELIIAIVILGVIAVIAAPRFINISKDAKANTMLSVAAGMESALTLLHSQA 60
           +S  QGFTLIELII IV+LG++AV AAP+F+N+  DA+ + +  +A  +ESA ++++ +A
Sbjct: 4   VSTQQGFTLIELIIVIVLLGILAVTAAPKFLNLQDDARDSVLQGIAGSIESAASVVYGKA 63

Query: 61  LIEGQDIGK-GEITINGVKTPLLNGYPSVNGKDSFEEINAQVQAWFNIDSVGKNVIEIDS 119
           LI GQ   + G + +       + GYP  +   +   +         +D+      +I+ 
Sbjct: 64  LINGQASAETGSVDVGSSSVNTVYGYPDASAATNLTNL---------LDA------DIND 108

Query: 120 SAAPFFIDKASSRNQIYIFFSD-----APTTGDRTEYGCQVRYQNPESEG--PSVRVLT 171
                  D A S   + + +       + T        C + Y N   EG  P++ V T
Sbjct: 109 GGDYLTADVAGSDPAVILIYYSGYTGYSTTPPSAANAPCTITYTNSTGEGERPTINVTT 167