Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 345 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

 Score = 62.0 bits (149), Expect = 2e-14
 Identities = 69/270 (25%), Positives = 108/270 (40%), Gaps = 12/270 (4%)

Query: 5   TYLNKSRIMLALVLSTVLGTAQANEPPVYKLTLAETWGANTPILGDAPKNMAKLAAEMSN 64
           T L  +    AL + +    AQA   P YK++L    G  TP  G A K  A +  E + 
Sbjct: 6   TLLGLAAAATALGMFSTGAMAQAAYKPEYKMSLV--LGPPTP-WGQAGKIWADMVKERTQ 62

Query: 65  GRIQIRIDSANK--HKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTLFFSSMPFGMIAT 122
           GRI I++              F  ++ G  D+   S+  W  +V     FS MPF M   
Sbjct: 63  GRINIKLYPGVSLIQGDQTREFSALRQGVIDMAVGSTINWSPQVKQLNLFS-MPFLMPDY 121

Query: 123 EQYAWFYYGGGMPLMEKVYAPHNLLSFPGGNSDIQMGGWFKKEINSVDDLQGLKMRIPG- 181
                   G     M K      ++    G +  +     KK I S  D++G+K+R+ G 
Sbjct: 122 AAIDALTQGEVGKEMFKTLEKAGVVPLAWGENGFREITNSKKPIKSPADIKGMKIRVVGS 181

Query: 182 -FAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLR-MGFHKIAPYYYTAWH 239
               ++   LGA PT ++  +   +L  G +D  E   P F    +    +   + T W 
Sbjct: 182 PIYSDMFTALGANPTQMSWADAQPALASGAVDGQE--NPLFLFTVLKMQTVGQKFVTTWG 239

Query: 240 EPGSETQFLVNKKKWDT-LPKDIQVILETA 268
                  F+VNK+ W +  P D  ++ + A
Sbjct: 240 YVADPLVFVVNKEIWASWTPADQAIVRQAA 269