Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

 Score =  155 bits (392), Expect = 2e-42
 Identities = 103/336 (30%), Positives = 165/336 (49%), Gaps = 7/336 (2%)

Query: 15  ALVLSTVLGTAQANEPPVYKLTLAETWGANTPILGDAPKNMAKLAAEMSNGRIQIRIDSA 74
           A V +  +     +      L    TW A   I  +   + AK   +M+  R++I +  A
Sbjct: 16  AAVAAGAMSVPMVSMAQTTSLRFQSTWPAKD-IFHEYALDYAKKVNDMAGNRLKIEVLPA 74

Query: 75  NKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTLFFSSMP-FGMIATEQYAWFYYGGG 133
                   + D V  G  D GH    YW GK      + S P +GM A    AW  YGGG
Sbjct: 75  GSVVPAFQLLDAVAKGTLDGGHGVVAYWYGKNSALALWGSGPGYGMDANMILAWHTYGGG 134

Query: 134 MPLMEKVYAPHNL--LSFPGGNSDIQMGGWFKKEINSVDDLQGLKMRIPGFAGEVLAKLG 191
             LM+++Y   NL   S+  G    Q  GWFKK +   +D++GLK R  G A +V   +G
Sbjct: 135 KALMDEIYKGLNLDVASYLYGPMPTQPLGWFKKPVAKAEDMKGLKFRTVGLAVDVFTDMG 194

Query: 192 AKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMGFHKIAP-YYYTAWHEPGSETQFLVN 250
           A    +  GE+  +L+RG IDA E+   + D  +GF  +A      ++H+ G + + L N
Sbjct: 195 AAVNPLPGGEIVPALDRGLIDAAEFNNASSDRVLGFPDVAKNCMLQSFHQSGEQFEVLFN 254

Query: 251 KKKWDTLPKDIQVILETAFRVAAFDMYNQAIDANATSWAAMKSEYPDIKVRDFPPAVLAA 310
             K  +LP +++ I+E A + A+ DM  +AID N+  +  +K     IK    P AVL A
Sbjct: 255 GSKLKSLPPELKSIIEYATQAASADMSWKAIDRNSKDYEELKK--AGIKFYKTPDAVLRA 312

Query: 311 LRQANNELLQEQAASDPLAKEIIDSQQAYLTKVRDW 346
              + ++ + +++A +P+ K+++DSQ+A+  +   W
Sbjct: 313 QLASWDKTIAKKSAENPMFKKVLDSQRAFAERAGQW 348