Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

 Score = 44.3 bits (103), Expect = 5e-09
 Identities = 58/279 (20%), Positives = 110/279 (39%), Gaps = 19/279 (6%)

Query: 5   TYLNKSRIMLALVLSTVLGTAQANEPPVYKLTLAETWGANTPI---LGDAPKNMAKLAAE 61
           T L + R +  L      G   A          +  +G N P+   L    +  A+  A+
Sbjct: 2   TSLTRRRALRTLSALPAAGIVTALPRIARAAEFSYKYGNNLPLTHPLNIRAQEAAERIAK 61

Query: 62  MSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVP----NTLFFSSMPF 117
            + GR++I+I   N+      +   V+SG  +    S+      VP    N + F+   +
Sbjct: 62  ETKGRVEIKIFPNNQLGGDTDMLAQVRSGGIEFFTPSALVIATLVPVAAINAVGFAFNDY 121

Query: 118 GMIATEQYAWFYYGGGMPL-MEKVYAPHNLLSFPG-GNSDIQMGGWFKKEINSVDDLQGL 175
             +      W    G +   +    A   L +F    ++  +     K  + +  D+ GL
Sbjct: 122 TQV------WAAMDGKLGAHVRGAIAKARLYAFEKMWDNGFRQTTSSKAAVATAKDMDGL 175

Query: 176 KMRIP--GFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMGFHKIAPY 233
           K+R+P    +  +   LGA P ++   E+Y++L+   +DA E   P   +   F      
Sbjct: 176 KIRVPVSPLSISMFKGLGAAPASLQFSEVYSALQTKIVDAQENPLPIIQVAKLFE--VQK 233

Query: 234 YYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVA 272
           + +  +       F+ N + W+ LP+D++ I+  A   A
Sbjct: 234 FCSLTNHIWDGYWFIANGRAWEALPEDLKTIVARAINDA 272