Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., TRAP transporter substrate-binding protein from Variovorax sp. OAS795

 Score =  208 bits (529), Expect = 2e-58
 Identities = 115/297 (38%), Positives = 169/297 (56%), Gaps = 4/297 (1%)

Query: 62  MSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTLFFSSMPFGMIA 121
           MS G+ +I + +A +     GV D V+ G  +  H+  YY+ GK P     S++PFGM A
Sbjct: 59  MSGGKFEISVHAAGELMPAFGVVDGVQQGSVEACHTVPYYFYGKNPAFALGSAIPFGMNA 118

Query: 122 TEQYAWFYYGGGMPLMEKVYAPHNLLSFPGGNSDIQMGGWFKKEINSVDDLQGLKMRI-P 180
            +  AW  +G G  LM++ Y  + +LSF GGN+  QMGGWF+KEI +  DL+GLKMR+  
Sbjct: 119 RQMNAWMMHGNGRKLMDEFYGTYGMLSFNGGNTGTQMGGWFRKEIKTPADLKGLKMRLGG 178

Query: 181 GFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMGFHKIAP-YYYTAWH 239
           G  G+V+ KLG  P +I  GE+Y +LE+GTIDA EWVGP  D ++GF+K+AP YYY  W 
Sbjct: 179 GLVGDVMTKLGVVPQSIPGGEIYQALEKGTIDAAEWVGPYDDQKLGFNKVAPNYYYPGWW 238

Query: 240 EPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFDMYNQAIDANATSWAAMKSEYPDIK 299
           E G E  F +NKK +D L  + + I+  A  +AA DM  +    N T+   +       K
Sbjct: 239 EGGPEVDFFINKKAFDALTPENKAIIAAASAMAAQDMLAKYDARNPTALKQLIG--AKTK 296

Query: 300 VRDFPPAVLAALRQANNELLQEQAASDPLAKEIIDSQQAYLTKVRDWTRISTQAYLN 356
           +  F   +L A  +A+ ++ +E +A  P  K+I     A+      W R++   + N
Sbjct: 297 LLPFSKEILDASYKASLQVYEENSAKSPEWKKIYTDFLAFQRDQVAWFRVAEGRFDN 353