Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) from Pseudomonas putida KT2440

 Score = 51.2 bits (121), Expect = 4e-11
 Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 14/232 (6%)

Query: 51  APKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTL 110
           A +NM K   + SNG I  ++ +     +   V +  + G   +   S       VP+  
Sbjct: 42  AEQNMGKKLEDASNGEITFKMFAGGVLGSEKEVIEQAQIGAVQMTRVSLGIVGPVVPDVN 101

Query: 111 FFSSMPFGMIATEQYAWFYYGG-GMPLMEKVY-APHNLLSFP---GGNSDIQMGGWFKKE 165
            F+ MPF     +       G  G  +++K+  +  NL++     GG+  I    + KK 
Sbjct: 102 VFN-MPFVFRDHDHMRKIIDGEIGQEILDKITNSDFNLVALAWMDGGSRSI----YTKKP 156

Query: 166 INSVDDLQGLKMRIPG--FAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDL 223
           + S++DL+G+K+R+ G     +++  +G     +  GE++++L+ G ID  E   P   L
Sbjct: 157 VRSLEDLKGMKIRVQGNPLFIDMMNAMGGNGIAMDTGEIFSALQTGVIDGAENNPPTL-L 215

Query: 224 RMGFHKIAPYYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFD 275
                + A YY    H    E   +++K  W+ L  + Q +++   R A  +
Sbjct: 216 EHNHFQSAKYYTLTGHLILPE-PVVMSKTTWNKLSPEQQALVKKVAREAQME 266