Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 18/226 (7%)

Query: 51  APKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTL 110
           A ++M++L  + S G+ +I++ + +   +     D VK G  D+   +        P +L
Sbjct: 40  AVRHMSQLLDQRSGGKYKIKVFNKSALGSEKETLDQVKIGALDMNRVNISSLNAICPKSL 99

Query: 111 FFSSMPFGMIATEQYAWFYYGGGMPLMEKVY--APHN----LLSFPGGNSDIQMGGWFKK 164
              +MPF   +TE       G   P+ E++     H     L  +  G   I    + KK
Sbjct: 100 V-PTMPFLFRSTEHMRAVLDG---PIGEEILKGCEHQGLVGLAFYDSGARSI----YAKK 151

Query: 165 EINSVDDLQGLKMRIP--GFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFD 222
            + S+ D++G+K+R+        V   +GA  T +A  E+YT L+ G IDA E   P+++
Sbjct: 152 PVRSLADVKGMKIRVQQSDLWVAVATAMGANATPMATAEVYTGLKTGVIDAAENNEPSYE 211

Query: 223 LRMGFHKIAPYYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETA 268
               +  +  Y YT  H    E   +++K  +D +    Q +   A
Sbjct: 212 GFKHYEAVKVYSYTQ-HSMAPE-MLVISKAVFDKMSPADQALFRAA 255