Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., TRAP transporter solute receptor, unknown substrate 3 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 53.1 bits (126), Expect = 1e-11
 Identities = 78/269 (28%), Positives = 117/269 (43%), Gaps = 46/269 (17%)

Query: 68  QIRIDSANKHKAPLGV-FDMVKSGQYDLGHSSSYYWKGKVPNT---LFFSSMPFGMIATE 123
           +++ID+A K    L   FD+ + GQ DL      +  G  PN    L    +PF     E
Sbjct: 63  RVKIDTAPKVVGTLPAQFDVARDGQADL----VIFIPGYTPNRFDLLEVLQLPFVSDNPE 118

Query: 124 QYAWFYYGGGMPLMEKVYAPHNLLSF-------PGGNSDIQMGGWF--KKEINSVDDLQG 174
            YA        PL ++ Y  H L S+       P     +  G  F  K+ + SV D +G
Sbjct: 119 VYA--------PLADRFYRKH-LASYNEFKGVHPLSVYVVSPGQIFNSKRPLRSVADFKG 169

Query: 175 LKMRIP-GFAGEVLAKLGAKPTNIAPGELYTSLERGTIDAL----EWVGPAFDLRMGFHK 229
           LKMR P   A + L+ LGA P +    E Y  L  G ID      E + PAF L     +
Sbjct: 170 LKMRSPQTSATQALSLLGAVPISKPVSETYELLSSGVIDGTFMPPESI-PAFKLT----E 224

Query: 230 IAPYYYTAWHEPGSETQFL----VNKKKWDTL-PKDIQVILETAFRVAAFDMYNQAIDAN 284
           + PY   A   PG+    +    +N+ KW +L  +D + I   +  V A ++     + +
Sbjct: 225 LVPY---ATIVPGAVYNTVLVLGINEDKWKSLRAEDREAISRISGDVFARNIGRAYANGD 281

Query: 285 ATSWAAMKSEYPDIKVRDFPPAVLAALRQ 313
             ++  M+      +V  FPPA LA ++Q
Sbjct: 282 KAAFEIMRKAGKPAEV--FPPAALAEMKQ 308