Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., TRAP transporter solute receptor, unknown substrate 6 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  200 bits (509), Expect = 4e-56
 Identities = 112/306 (36%), Positives = 173/306 (56%), Gaps = 5/306 (1%)

Query: 47  ILGDAPKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKV 106
           I G A K MA+    +S G+ +I +  A +     GV D ++    D+  +++YY+ GK 
Sbjct: 45  IFGSAEK-MAQTVKALSGGKFEISVHPAGELMPAFGVVDALQGDNIDMAQTAAYYFTGKD 103

Query: 107 PNTLFFSSMPFGMIATEQYAWFYYGGGMPLMEKVYAPHNLLSFPGGNSDIQMGGWFKKEI 166
           P+  F  ++PFG+ A +  +W  +G G  LM++ +A +N  +   GN+  QMGGW++KEI
Sbjct: 104 PSFAFSCAVPFGLTARQNTSWKLHGNGGKLMDEFFAQYNFRTASAGNTTTQMGGWYRKEI 163

Query: 167 NSVDDLQGLKMRI-PGFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRM 225
            +V DL+GLKMR+  G  GE +AKLG    N+  GE+Y +LE+GT+DA E+  P  D ++
Sbjct: 164 KTVADLKGLKMRMGGGVFGEGMAKLGVVSQNLPAGEIYQALEKGTLDAAEFTVPHDDAKL 223

Query: 226 GFHKIAP-YYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFDMYNQAIDAN 284
           GFHK+AP YYY  W E G++ +F +N KK++ L  + + IL  A  VAA DM  +    N
Sbjct: 224 GFHKVAPYYYYPGWWEGGADLEFFINLKKFNALSDENKAILNAAMAVAATDMTAKYDALN 283

Query: 285 ATSWAAMKSEYPDIKVRDFPPAVLAALRQANNELLQEQAASDPLAKEIIDSQQAYLTKVR 344
             +   + +E   +K   FP AV+ A  +A  E+  E  A  P  K+I    +++     
Sbjct: 284 PIALKKLVAEKTQLKA--FPKAVIDAGFKACMEVFAEHEAKSPTFKKIHQDMRSFQRDQI 341

Query: 345 DWTRIS 350
            W R S
Sbjct: 342 LWNRFS 347