Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 57.4 bits (137), Expect = 5e-13
 Identities = 74/300 (24%), Positives = 132/300 (44%), Gaps = 19/300 (6%)

Query: 53  KNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTLFF 112
           +  A+L A  S G+I++ +       +       ++ G  ++   +S  +  +V     +
Sbjct: 45  EKFAELVAAKSGGKIKVNLFPGGTLGSDQANVSAIQGGTLEMASMNSGIFASQVKEFAIY 104

Query: 113 SSMPFGMIATEQYAWFYYGG--GMPLMEKVYAPH--NLLSFPGGNSDIQMGGWFKKEINS 168
              PF M A  + A     G  G  L +K+       L  +  G  +I      K+ I  
Sbjct: 105 D-FPF-MFANTKEADAVVDGPFGKKLHDKLQEKGLIGLAYYELGFRNITNS---KRPITK 159

Query: 169 VDDLQGLKMRIPGFAGEV--LAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMG 226
           ++DL+GLK+R+      V  +  LGA PT +   E+Y +LE+  ID  E   P   +   
Sbjct: 160 LEDLEGLKLRVIPNPINVDWVKALGANPTPLPFPEVYAALEQKAIDGQE--NPVTVINAN 217

Query: 227 -FHKIAPYYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFDMYNQAIDANA 285
            F+++  Y   + H+   ++  +++KK WDTL    + I+  A + +A     QA    A
Sbjct: 218 KFYEVQKYVVLSNHQYNPQS-VIISKKFWDTLDAAQKKIVADAAQESAKYQREQARGQVA 276

Query: 286 TSWAAMKSEYPDIKVRDFPPAVLAALRQANNELLQEQAASDPLAKEIIDSQQAYLTKVRD 345
            +   MK     ++V +  PA    LR     ++ + A +  + +E + S QA L KVR+
Sbjct: 277 AALDNMKK--GGMQVTELSPAETDKLRDKLRPVIAKFAVA--VGQETVQSLQAELAKVRN 332