Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 60.8 bits (146), Expect = 5e-14
 Identities = 74/304 (24%), Positives = 135/304 (44%), Gaps = 33/304 (10%)

Query: 55  MAKLAAEMSNGRIQIRIDSANKHKAPLG----VFDMVKSGQYDLGHSSSYYWKGKVPNTL 110
           M + AA+ S G++++       +   LG        V++G  D+  +S+    G +P   
Sbjct: 47  MTQCAADKSGGKLKL----VTYYDGALGNDTTASQQVRTGSLDMVLTSTAPLVGAIPQLA 102

Query: 111 FFSSMPFGMIATEQYAWFYYGGGMPLMEKVYAPH-------NLLSFPGGNSDIQMGGWFK 163
            F  +PF + + E+ A     G +    K +AP        NL  +  G  ++      K
Sbjct: 103 VFD-LPF-LFSNEREADQLLDGPVG---KSFAPKYEAAGLVNLAYWENGFRNVTNS---K 154

Query: 164 KEINSVDDLQGLKMRIPGFAG--EVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGP-A 220
           + +   +DLQG+KMR+       +  + LG+ PT +A  E+Y++LE  T+D  E   P A
Sbjct: 155 RAVGKWEDLQGVKMRVMQNKVFLDTFSALGSNPTPLAFSEVYSALETRTVDGQE--NPIA 212

Query: 221 FDLRMGFHKIAPYYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFDMYNQA 280
               M F+++  Y     H   S    L++KKK+DTL    Q +++        +     
Sbjct: 213 LIENMKFYEVQKYLSLTRH-AYSPLAVLISKKKYDTLSPQEQAVMQECAVTGQEESRRVG 271

Query: 281 IDANATSWAAMKSEYPDIKVRDFPPAVLAALRQANNELLQEQAASDPLAKEIIDSQQAYL 340
             A+A   A +K     ++V +  PA L  +R    ++   QA    + ++++ +  A L
Sbjct: 272 RAADADVIAKLKKN--GMQVNEVSPAELQRMRDKVKDVYASQA--KVVGEDVMTAVNAEL 327

Query: 341 TKVR 344
            ++R
Sbjct: 328 QRIR 331