Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  163 bits (413), Expect = 6e-45
 Identities = 102/316 (32%), Positives = 161/316 (50%), Gaps = 7/316 (2%)

Query: 35  LTLAETWGANTPILGDAPKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDL 94
           L    TW A   I  +  ++ AK   +M+  R++I +  A        + D V  G  D 
Sbjct: 37  LRFQSTWPAKD-IFHEYAQDFAKKVNDMAGSRLKIEVLPAGSVVPAFQLLDAVAKGTLDG 95

Query: 95  GHSSSYYWKGKVPNTLFFSSMP-FGMIATEQYAWFYYGGGMPLMEKVYAPHNL--LSFPG 151
           GH    YW GK      + S P +GM A    AW  YGGG  LME++Y   NL  +S+  
Sbjct: 96  GHGVVAYWYGKNSALALWGSGPGYGMDANMVLAWHKYGGGKALMEEIYKSLNLDVVSYLS 155

Query: 152 GNSDIQMGGWFKKEINSVDDLQGLKMRIPGFAGEVLAKLGAKPTNIAPGELYTSLERGTI 211
           G    Q  GWFKK +  V D++GLK R  G A +V   +G     +  GE+  +L+RG I
Sbjct: 156 GPMPCQPLGWFKKPVAKVTDMKGLKFRTVGLAVDVFTDMGTAVNPLPGGEIVPALDRGLI 215

Query: 212 DALEWVGPAFDLRMGFHKIAP-YYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFR 270
           DA E+   + D  +GF  +A      ++H+ G + + L NK K + LP +++ I++ A  
Sbjct: 216 DAAEFNNASSDRVLGFPDVAKNCMLQSFHQSGEQFEILFNKTKLNALPAELKAIIDNAAE 275

Query: 271 VAAFDMYNQAIDANATSWAAMKSEYPDIKVRDFPPAVLAALRQANNELLQEQAASDPLAK 330
            A+ DM  +AID N+  + A+K +   IK    P  +L A   + ++ + ++A  +PL K
Sbjct: 276 AASADMSWKAIDRNSQDYEALKKD--GIKFYKTPDPILRAQLASWDKTIAKKAGENPLFK 333

Query: 331 EIIDSQQAYLTKVRDW 346
           +++DSQ+A+  +   W
Sbjct: 334 KVLDSQKAFAQRAGQW 349