Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., TRAP transporter solute receptor, unknown substrate 6 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  194 bits (494), Expect = 2e-54
 Identities = 102/303 (33%), Positives = 172/303 (56%), Gaps = 5/303 (1%)

Query: 56  AKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSYYWKGKVPNTLFFSSM 115
           A+  +E+++G+ QI++    +  APL V D V+SG  + G ++++++ GK P   F S++
Sbjct: 54  AQRVSELTDGKFQIQLFGPGEIVAPLAVLDAVQSGAVEAGFTATFFYYGKDPTFAFGSAI 113

Query: 116 PFGMIATEQYAWFYYGGGMPLMEKVYAPHNLLSFPGGNSDIQMGGWFKKEINSVDDLQGL 175
           PFG+   +  AW Y GGG+ L+ + +A + +   P G +  QMGGW++KEI +V DL+GL
Sbjct: 114 PFGLNTRQHAAWMYAGGGLDLLNQFHANYGVHYVPMGFTGAQMGGWYRKEIKTVKDLEGL 173

Query: 176 KMRIPGFAGEVLAKLGAKPTNIAPGELYTSLERGTIDALEWVGPAFDLRMGFHKIAP-YY 234
           KMRI G  G+V+ +LG  P  +  G++Y +LERG +DA E+  P  D  +G HK+A  YY
Sbjct: 174 KMRISGIGGQVMQRLGVTPQQLPAGDVYAALERGLLDAAEYTNPIDDELLGMHKVAKYYY 233

Query: 235 YTAWHEPGSETQFLVNKKKWDTLPKDIQVILETAFRVAAFDMYNQAIDANATSWAAMKSE 294
           Y  W E   +    +N++KW  LP+  ++ ++   R     + N     NA   AA+K  
Sbjct: 234 YPGWWEGSVQVGHFINQQKWAELPERYKIAVQAVAREQEQAIINNYDAKNA---AALKRL 290

Query: 295 YP-DIKVRDFPPAVLAALRQANNELLQEQAASDPLAKEIIDSQQAYLTKVRDWTRISTQA 353
               + ++ FP  V++A  +A  E + E A+ +   K+++D   A+      W R++  +
Sbjct: 291 IALGVNIKTFPREVMSAGYKATFEHMDELASKNANFKKVMDHYMAFRADALLWFRVAESS 350

Query: 354 YLN 356
           Y N
Sbjct: 351 YDN 353