Pairwise Alignments

Query, 359 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., Predicted rhamnogalacturonide-specific TRAP-type transporter, substrate-binding component RhiA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 51.2 bits (121), Expect = 4e-11
 Identities = 67/283 (23%), Positives = 115/283 (40%), Gaps = 28/283 (9%)

Query: 41  WGANTPILGDAPKNMAKLAAEMSNGRIQIRIDSANKHKAPLGVFDMVKSGQYDLGHSSSY 100
           +  N+  + DA   + +   E + G I+++     +      + ++ + G  D+   SS 
Sbjct: 32  YAENSQPVKDALHFLGQQVEEKTGGDIKVQYFPDGQLGGERELVELTQVGVVDITKVSSG 91

Query: 101 YWKGKVPNTLFFSSMPFGMIATEQYAWFYYGGGMPLMEKVYAPHNLLSFPGGNSDIQMGG 160
             +   P    FS +P+     E+Y  +       +ME VY       F G        G
Sbjct: 92  LMESFSPEYGVFS-LPYLFATVEEY--YRVMDNPQVMEPVYQSTAAQGFIGV-------G 141

Query: 161 WF----------KKEINSVDDLQGLKMRI--PGFAGEVLAKLGAKPTNIAPGELYTSLER 208
           W+          K  I  ++DL+G K+R+     A + L  LGA P  ++  E+YTSL++
Sbjct: 142 WYDSGARNFYMSKAPIKRIEDLRGKKIRVMQSETAIQTLKLLGASPIAMSQAEVYTSLQQ 201

Query: 209 GTIDALEWVGPAFDLRMGFHKIAPYYYTAWHEPGSETQFLVNKKKWDTLPKDIQVILETA 268
           G +D  E     F L +  H     YYT           L++    + L  + Q I+E A
Sbjct: 202 GILDGAE--NNEFALTIARHGEVARYYTYDMHTRIPDILLMSTLTLEKLTPEQQRIVEAA 259

Query: 269 FRVA-AFDMYNQAIDANATSWAAMKS---EYPDIKVRDFPPAV 307
            + +  F+      +   T  AA+K    E+ +I  + F  AV
Sbjct: 260 IKASIEFEKAAWDKEIEKTRLAAVKDFNVEFYEIDKKPFQEAV 302