Pairwise Alignments

Query, 652 a.a., iron-regulated outer membrane virulence protein from Vibrio cholerae E7946 ATCC 55056

Subject, 664 a.a., ligand-gated channel protein from Serratia liquefaciens MT49

 Score =  566 bits (1458), Expect = e-165
 Identities = 306/662 (46%), Positives = 420/662 (63%), Gaps = 29/662 (4%)

Query: 12  SVTLGLMFSASAFAQDATKTDETMVVTAAGYAQVIQNAPASISVISREDLESRYYRDVTD 71
           ++ +  + SA A A      D TMVVTA+G+ Q IQ++PASISVI R+ +E + YRD+TD
Sbjct: 11  ALIIATLTSAGAVAAQPDAQD-TMVVTASGFQQKIQDSPASISVIPRQQIEDKAYRDITD 69

Query: 72  ALKSVPGVTVTGGGDTTDISIRGMGSNYTLILVDGKRQTSRQTRPNSDGPGIEQGWLPPL 131
           ALK VPGV VTGGG ++DISIRGM S YTLILVDGKR  +R TRPNSD  GIEQGWLPPL
Sbjct: 70  ALKDVPGVVVTGGGSSSDISIRGMSSKYTLILVDGKRVDTRGTRPNSDNAGIEQGWLPPL 129

Query: 132 QAIERIEVIRGPMSTLYGSDAIGGVINIITRKDQ--QQWSGNVQLSTVVQENRASGDEQS 189
           +AIERIEV+RGPMS+LYGSDA+GGVIN+ITRK    Q W G++      QEN  SGD   
Sbjct: 130 EAIERIEVVRGPMSSLYGSDAMGGVINVITRKTSTTQAWKGSLHGDATFQENSNSGDIFQ 189

Query: 190 ANFFVTGPLSDA-LSLQVYGQTTQRDEDEIEHGYGDKSLRSLTSKLNYQLNPDHQLQLEA 248
            N + +GPL +  L L+V G  ++R ED+I +G+ ++ +RS T+  +   N  +    E 
Sbjct: 190 TNAYASGPLIEGLLGLRVNGLLSRRAEDQILNGFNEQRMRSGTAVFSLTPNEQNDFDFEI 249

Query: 249 GVSAQDRENNVGKSAQSSGCRG-TC---SNTDNQYRRNHVAVSHQGDWQDVGQSDTYLQY 304
           G S QDR +  GKS  +  CR   C   S +D+ Y R + AV+H G + D G + +Y+Q 
Sbjct: 250 GRSLQDRNSTPGKSMATENCRNKKCTPNSASDSLYTRTNYAVTHNG-YYDFGNTTSYIQR 308

Query: 305 EENTNKSREMSIDNTVFKSTLVAPIGEHMLSFGVEGKHESLEDKTSNKISSR---THISN 361
           EE  N  R+M + NT+F +     +G HML+ G + ++E L D   N++++      ++ 
Sbjct: 309 EETNNPGRDMKMYNTIFNTQTQFDLGSHMLNLGGQYRYEKLSD-GGNQLAAADKLNQLTR 367

Query: 362 TQWAGFIEDEWALAEQFRLTFGGRLDHDKNYGSHFSPRVYGVWNLDPLWTVKGGVSTGFR 421
             WA F EDEWA+   F LT G R+D D+NYG+H++PR+YGVW+L   +T+KGGVS G+R
Sbjct: 368 WSWALFAEDEWAMTNDFSLTSGIRMDQDQNYGNHWTPRMYGVWHLTEQFTLKGGVSAGYR 427

Query: 422 APQLREVTPDWGQVSGGGN---IYGNPDLKPETSINKELSLMYSTGSGLAASLTAFHNDF 478
           +P LR+ +  WGQ++GGG    I GNPDLKPE S+++E+ +M+    GL AS+T F+ DF
Sbjct: 428 SPDLRQSSAGWGQITGGGRTSIIIGNPDLKPEKSLSEEIGVMWDNLQGLNASVTLFNTDF 487

Query: 479 KDKITRVACPANICTAGPN----QWGAAPTY----RVNIDEAETYGAEATLSLPITESVE 530
           KDKIT V      C +G        G  P Y    R N+D+A   G EAT    IT+  +
Sbjct: 488 KDKITEV----RRCDSGDGDAQCMIGNTPYYFISDRTNVDKANMRGVEATFGWEITKDWQ 543

Query: 531 LSSSYTYTHSEQKSGNFAGRPLLQLPKHLFNANLSWQTTDRLNSWANLNYRGKEMQPEGG 590
           L+++YTYT SEQKSG+F G+PL Q+PKH+ N+ L WQ T  ++ W+ +N+R K       
Sbjct: 544 LTTNYTYTTSEQKSGDFQGKPLNQMPKHMVNSVLDWQATHDVSLWSRVNFRSKTSDYMSR 603

Query: 591 ASNDDFIAPSYTFIDTGVTYALTDTATIKAAVYNLFDQEVNYAEYGYVEDGRRYWLGLDI 650
           +S      PSYTF+D G++Y       +   VYN+ D+ V+Y  Y  V DGRRY +G+  
Sbjct: 604 SSMAK-STPSYTFVDAGLSYQANKNLMVTGGVYNILDKTVDYDNYNTVLDGRRYTVGMTY 662

Query: 651 AF 652
            F
Sbjct: 663 NF 664