Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., 16S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  211 bits (537), Expect = 1e-59
 Identities = 115/241 (47%), Positives = 155/241 (64%), Gaps = 3/241 (1%)

Query: 1   MRIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKK 60
           MR+ R +   P+  LG   L E  A +I RVLRM  G  V LFDG G EF   + EVGKK
Sbjct: 1   MRLSRFFTDTPL-SLGDHDLPEAQAHYISRVLRMGEGDAVQLFDGSGLEFRGSLLEVGKK 59

Query: 61  QVLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLD 120
           +V V +TE      ESPL +HLGQ +SRG++M++ IQK+ ELGV+ ITP+ S+RC V+L 
Sbjct: 60  RVTVQLTESFSGQTESPLRIHLGQGLSRGERMDWAIQKATELGVSEITPIFSDRCEVRLK 119

Query: 121 EKRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLN 180
           ++R +K++Q W+++AISACEQCGR+TVP I P + L  W  +    LKL LHP A+  ++
Sbjct: 120 DERADKRLQHWRQVAISACEQCGRSTVPVIHPPLLLVDWLKQTQADLKLVLHPVAEPMVS 179

Query: 181 TLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQVRFG 240
                 S +  LIGPEGGL+  E+D  +   +    LGPRVLRTETA + A+A  Q  +G
Sbjct: 180 --HAKPSSLAFLIGPEGGLTDLEVDTAQAAGYHAARLGPRVLRTETAPVVALAVAQQLWG 237

Query: 241 D 241
           D
Sbjct: 238 D 238