Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 245 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) from Variovorax sp. SCN45

 Score =  145 bits (367), Expect = 6e-40
 Identities = 87/240 (36%), Positives = 126/240 (52%), Gaps = 8/240 (3%)

Query: 3   IPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQV 62
           +PR +   P+    ++AL   AA H+ +VLRMQ G  + LFDG G E+ A +  +G+  V
Sbjct: 1   MPRFHCSVPLTAGASLALPAGAARHV-QVLRMQPGDALTLFDGAGGEYAATVERMGRSDV 59

Query: 63  LVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEK 122
            V +        E+   +HL   +   ++M++ ++K+ ELGV++I PL +    ++L  +
Sbjct: 60  AVTVGAHQPVEREASRAVHLAVGMPANERMDWLVEKATELGVSSIQPLATAHGVLRLSGE 119

Query: 123 RFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWC-------AEPTEALKLNLHPRA 175
           R EKK   W+ IA++ACEQCGRN VP I P+     W        A+  E L L+L    
Sbjct: 120 RAEKKRAHWEAIAVAACEQCGRNRVPVIHPVQTFSGWIAAQQQQGADTAERLVLSLADGT 179

Query: 176 KYSLNTLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAAL 235
           +      P     V +L GPEGGLS  E        F    LG RVLR ETAAL A+ +L
Sbjct: 180 RGIATVQPDDGRGVLVLSGPEGGLSGTEEQEAIARGFAPITLGSRVLRAETAALAALVSL 239