Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., Ribosomal RNA small subunit methyltransferase E from Pseudomonas lactucae CFBP13502

 Score =  209 bits (532), Expect = 4e-59
 Identities = 113/241 (46%), Positives = 153/241 (63%), Gaps = 3/241 (1%)

Query: 1   MRIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKK 60
           MR+ R +   P+  LG   L E  A +I RVLRM  G  V LFDG G EF   + EVGKK
Sbjct: 1   MRLSRFFTDTPL-SLGDHELPEAQAHYISRVLRMGEGDAVQLFDGSGQEFLGTLLEVGKK 59

Query: 61  QVLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLD 120
           +V V +T+      ESPL +HLGQ +SRG++M++ IQK+ ELGV  ITP+ SERC V+L 
Sbjct: 60  RVTVQLTQHFAGQAESPLHIHLGQGLSRGERMDWAIQKATELGVNAITPIFSERCEVRLK 119

Query: 121 EKRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLN 180
           ++R +K++  W+++AISACEQCGR+TVP I P + L  W  +    LKL LHP A+  ++
Sbjct: 120 DERADKRLLHWRQVAISACEQCGRSTVPVIHPPLLLADWLKQTEADLKLVLHPVAEPMVS 179

Query: 181 TLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQVRFG 240
                 S +  LIGPEGGL+  E++  +   +    LGPRVLRTETA + A+A  Q  +G
Sbjct: 180 --HAKPSSLAFLIGPEGGLTDNEVETAQGAGYHAARLGPRVLRTETAPVVALAVAQQLWG 237

Query: 241 D 241
           D
Sbjct: 238 D 238