Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., Ribosomal RNA small subunit methyltransferase E from Pseudomonas sp. DMC3

 Score =  207 bits (528), Expect = 1e-58
 Identities = 115/241 (47%), Positives = 155/241 (64%), Gaps = 3/241 (1%)

Query: 1   MRIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKK 60
           MR+ R +   P+   G   L E  A +I RVLRM  G  V LFDG G EF   + +VGKK
Sbjct: 1   MRLSRFFIDAPL-STGEHELPEAQAHYISRVLRMAEGDAVQLFDGSGHEFRGSLVDVGKK 59

Query: 61  QVLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLD 120
           +V+V I E+    IESPL +HLGQ +SRG++M++ IQK+ ELGVT ITP+ SERC V+L 
Sbjct: 60  RVVVQIDEQFAGQIESPLQIHLGQGLSRGERMDWAIQKATELGVTQITPIFSERCEVRLK 119

Query: 121 EKRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLN 180
           ++R +K++  W+++AISACEQCGR+ VP I P + L  W  +    LKL LHP A+  L 
Sbjct: 120 DERADKRLLHWRQVAISACEQCGRSRVPVIHPPVLLADWLKQTEAELKLVLHPVAE-PLV 178

Query: 181 TLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQVRFG 240
           +   P + +  LIGPEGGL+  E++  +   F    LGPRVLRTETA + A+A  Q  +G
Sbjct: 179 SHAKPAT-LAFLIGPEGGLTDAEVEQAKGNGFHAARLGPRVLRTETAPVVALAVAQQLWG 237

Query: 241 D 241
           D
Sbjct: 238 D 238