Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Paraburkholderia sabiae LMG 24235

 Score =  162 bits (411), Expect = 4e-45
 Identities = 96/245 (39%), Positives = 139/245 (56%), Gaps = 8/245 (3%)

Query: 3   IPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQV 62
           +PR +   P      V+L ++   H+ RVLR+Q G  V LF+G G E+ A I ++ +   
Sbjct: 1   MPRFFVGTPFKTDDIVSLPDEVNRHV-RVLRLQPGDTVSLFNGNGGEYGAEIVDMDRHGT 59

Query: 63  LVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEK 122
           +V I E  +   E P  L L Q I+  DKM++ I+K+ ELG     PL + R  V+L  +
Sbjct: 60  IVRIGEFRDIEAEPPYQLTLAQGIAGSDKMDWLIEKATELGACEFVPLTTTRSVVRLAGE 119

Query: 123 RFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCA----EPTEA-LKLNLHPRAKY 177
           R +++   WQ+I  ++CEQCGRN +PE+ P  +L  W +    +P +  L+L L PRA  
Sbjct: 120 RAQRRQVHWQRIVQASCEQCGRNRLPEVMPTRELATWLSSMPKDPVDGELRLLLSPRASV 179

Query: 178 SLNTLPTPVSKVR--LLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAAL 235
             + LPT   KVR  +L+GPEGG SA E      + F    LGPRVLRTETA +  ++AL
Sbjct: 180 PFSALPTEPPKVRALVLVGPEGGFSAAEEAAAASHGFMAVGLGPRVLRTETAGIAVLSAL 239

Query: 236 QVRFG 240
             R+G
Sbjct: 240 AARWG 244