Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 241 a.a., Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  144 bits (364), Expect = 1e-39
 Identities = 89/239 (37%), Positives = 132/239 (55%), Gaps = 12/239 (5%)

Query: 3   IPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQV 62
           +PR + P P+ +   ++L   AA H+ +VLR+Q GQ + LF+G G E+ A I+ +G+  V
Sbjct: 1   MPRFHCPAPLLEGQPLSLPAAAARHV-QVLRLQPGQTITLFNGQGGEWDATITRMGRSDV 59

Query: 63  LVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEK 122
            V +        E    +HL   +   D+M++ ++K+ ELGV ++ PL +    ++L  +
Sbjct: 60  EVVLGAHRATEREPARAVHLALGMPANDRMDWLVEKAAELGVASLQPLHTSHSVLRLAGE 119

Query: 123 RFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAW--CAEPTEA-------LKLNLHP 173
           R  KK   WQ +A++ACEQCG N VP + P+ D  AW     P +A       L     P
Sbjct: 120 RATKKQAHWQSVAVAACEQCGGNRVPTVHPVSDFAAWLKTLPPADAGLRCLLSLADGTQP 179

Query: 174 RAKYSLNTLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAI 232
            A+ +L  +P P + V  L GPEGGL+A E  + R   F    LGPRVLR ETAAL A+
Sbjct: 180 LAR-ALAGVPAP-APVWFLSGPEGGLNASEDALARAAGFLPVTLGPRVLRAETAALAAL 236