Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 244 a.a., Ribosomal RNA small subunit methyltransferase E from Methylophilus sp. DMC18

 Score =  195 bits (495), Expect = 8e-55
 Identities = 103/239 (43%), Positives = 153/239 (64%), Gaps = 2/239 (0%)

Query: 5   RIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQVLV 64
           R + P  +    +V LS++A  H  RV+R++ G  ++LF G G ++   +++V KK   V
Sbjct: 5   RFHSPAALTVGQSVPLSDNAMAHAVRVMRLKVGDTLILFCGDGFDYLCALTQVEKKSATV 64

Query: 65  NITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRF 124
            +  R + S ESPL++ L Q IS GD+M++TIQK+VELGV  I PL +ERC  KL   R 
Sbjct: 65  EVLSRTQVSNESPLNIRLLQGISSGDRMDYTIQKAVELGVREIFPLSTERCVTKLSGDRA 124

Query: 125 EKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAE--PTEALKLNLHPRAKYSLNTL 182
           EK+++ WQ +AI+ACEQ GR  +P +   + L  W ++    ++L L L+P     L +L
Sbjct: 125 EKRVEHWQGVAIAACEQSGRAIIPLVHAPLTLAQWLSQHATADSLNLLLNPVGAQRLASL 184

Query: 183 PTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQVRFGD 241
             P + + LLIGPEGGLSA EI +  ++ F+  +LGPR+LRTETAALTA++ +Q  +GD
Sbjct: 185 NPPKNAIHLLIGPEGGLSAAEIALASQHHFQSIVLGPRILRTETAALTAMSVMQSLWGD 243