Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., Ribosomal RNA small subunit methyltransferase E from Escherichia coli ECOR38

 Score =  346 bits (888), Expect = e-100
 Identities = 175/243 (72%), Positives = 193/243 (79%)

Query: 1   MRIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKK 60
           MRIPRIYHPEP+     +AL EDAA HIGRVLRM  GQ + LFDG    F A I+   KK
Sbjct: 1   MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKK 60

Query: 61  QVLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLD 120
            V V + E   +  ESPL +HLGQV+SRG+KMEFTIQKS+ELGV+ ITPL SERCGVKLD
Sbjct: 61  SVEVKVLEGQLDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLD 120

Query: 121 EKRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLN 180
            +R  KK+QQWQKIAI+ACEQCGRN VPEIRP MDLEAWCAE  E LKLNLHPRA  S+N
Sbjct: 121 SERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRASNSIN 180

Query: 181 TLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQVRFG 240
           TLP PV +VRLLIGPEGGLSA+EI MT RYQF + LLGPRVLRTET ALTAI ALQVRFG
Sbjct: 181 TLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQVRFG 240

Query: 241 DLG 243
           DLG
Sbjct: 241 DLG 243