Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 238 a.a., RNA methyltransferase from Caulobacter crescentus NA1000 Δfur

 Score = 90.9 bits (224), Expect = 2e-23
 Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 15/243 (6%)

Query: 5   RIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQVLV 64
           R++ P  +     V  + D + ++  V+R+  G E+LLF+G   E+ A + E  K+  L+
Sbjct: 3   RLFVPNDLSAGAGVVPTVDQSRYLTSVMRLSVGAELLLFNGRDGEWRATLVEATKRGCLL 62

Query: 65  NITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEKRF 124
              E+       P DL L   + +  ++E  ++K+ ELG   +   ++ R  V       
Sbjct: 63  KAEEQTRPMTLGP-DLDLIVAMVKRGRVETIVEKAAELGARRVRLTITRRTNVDF----- 116

Query: 125 EKKIQQWQKIAISACEQCGRNTVPEI----RPIMDLEAWCAEPTEALKL-NLHPRAKYSL 179
             K+ +   IA+ A EQ GR  VPE+    +    L+AW  +P   L   +    A+  +
Sbjct: 117 -VKLGRLDAIAMEAAEQTGRLDVPEVADPEKLDKILDAW--DPARRLVFCDEGGDARPMI 173

Query: 180 NTLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAALTAIAALQVR 238
             L        +LIGPEGG + EE +  R   F   + LGPR+LR +TAA++A+   Q  
Sbjct: 174 EALSGTTGPAAILIGPEGGFAPEERERLRGLAFVTPVSLGPRILRADTAAISAMTLWQAA 233

Query: 239 FGD 241
            GD
Sbjct: 234 AGD 236