Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., Ribosomal RNA small subunit methyltransferase E from Azospirillum sp. SherDot2

 Score = 95.5 bits (236), Expect = 9e-25
 Identities = 77/253 (30%), Positives = 118/253 (46%), Gaps = 34/253 (13%)

Query: 5   RIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQVLV 64
           R+Y   P+ +  +V L  + A  +  VLR+  G  V +F+G   E+ AVI   GK    +
Sbjct: 8   RLYVDSPLAEGQSVGLDHERAHFLRHVLRLDRGDSVAVFNGRDGEWRAVIDGFGKGWCSL 67

Query: 65  NITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCG---VKLDE 121
            + E+      +P DL L     +  +++F  +K+ E+GV+ + P+ + R     V LD 
Sbjct: 68  TVAEQRREQDTTP-DLWLVFAPLKKGRIDFVAEKATEMGVSRLWPVFTRRTDPNRVNLDR 126

Query: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLE----AW--------CAEPTEALKL 169
            R           A+ A EQC R +VPE+   + L+     W        CAE   A   
Sbjct: 127 LRAN---------AVEAAEQCERLSVPEMGEAVPLDRALAGWPADRRLYLCAEAGAA--- 174

Query: 170 NLHPRAKYSLNTLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETL-LGPRVLRTETAA 228
              P A+   +  P P +   LL+GPEGG    E+D   +  F   + LGPR+LR +TA 
Sbjct: 175 --RPVAEVLRDAPPGPAA---LLVGPEGGFDQSELDELAKLPFVVPVGLGPRILRADTAV 229

Query: 229 LTAIAALQVRFGD 241
           + A+A  Q   GD
Sbjct: 230 VAALACWQSLAGD 242