Pairwise Alignments

Query, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., Ribosomal RNA small subunit methyltransferase E from Acinetobacter radioresistens SK82

 Score =  179 bits (453), Expect = 6e-50
 Identities = 102/237 (43%), Positives = 134/237 (56%), Gaps = 1/237 (0%)

Query: 3   IPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKKQV 62
           +PR Y    +    TV L+E    H  +VLR Q G    LF+G G EF A ++E+ KK  
Sbjct: 1   MPRFYIEADLTVGTTVELTETVFHHWVKVLRAQIGDSATLFNGRGGEFEANLTEISKKTA 60

Query: 63  LVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDEK 122
            V I          P    LGQV+S+GD+M++ IQK+ ELGVTTI  L SERC ++L   
Sbjct: 61  SVAIRSSNPADRTPPFTTVLGQVMSKGDRMDYVIQKATELGVTTIQLLTSERCEMRLKYD 120

Query: 123 RFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLNTL 182
           R +KK+  WQ + I+ACEQCG N +PEI P + L  W  +   A +L L P  K   N L
Sbjct: 121 RDQKKLDHWQAVVIAACEQCGMNRIPEILPPVPLTDWLQQNLPATRLVLAPN-KRQQNVL 179

Query: 183 PTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQVRF 239
               + + LLIGPEGGLS  EIDM     F+   +G R+LRTETA + A++ L   F
Sbjct: 180 TDAQTDLALLIGPEGGLSEAEIDMANHAGFKNWCIGERILRTETAPVVALSILNHHF 236