Pairwise Alignments

Query, 368 a.a., twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., Type II secretion system protein E from Xanthobacter sp. DMC5

 Score =  112 bits (281), Expect = 2e-29
 Identities = 113/362 (31%), Positives = 171/362 (47%), Gaps = 38/362 (10%)

Query: 3   LNQYLDGMLTHKASDLYI---TVGAPILYRVDGELR---AQGEALSVADVTALLHAMMDD 56
           +N   D  +  +ASD++I     G  +  R+DG LR   A  + L  A ++ +      D
Sbjct: 176 VNDLFDKAMELRASDIHIGPFRTGLEVRLRIDGMLRPIHALADVLPQAVISRIKILAGLD 235

Query: 57  ARQAEFKQTREANFAVVRDSGRFRVSAFFQRELPGAVIRRI--ETRIPTFEELKLP---- 110
             +    Q   A   + RD    RV+    +    AVIR +  +  + T ++L L     
Sbjct: 236 IAERRLPQDGAARLKLGRDEIDVRVAIMPTQHGESAVIRLLARDRGVLTVDKLGLAPHDR 295

Query: 111 EVLQNLAIAKRGLVLVVGATGSGKSTTMAAMTGYRNQHRTGHILTVEDPIEFVHEHKRCI 170
           E L  L     G+V+V G TGSGK+TT+A +    N+  T  ILT+EDP+E+        
Sbjct: 296 ETLMKLLALPHGMVVVTGPTGSGKTTTLATILSVLNEP-TRKILTIEDPVEYEIRGVFQS 354

Query: 171 VTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANN 230
             + ++GL   ++  AL++ LRQ PD+I++GE+R  ET   A+  A TGHL + TLH + 
Sbjct: 355 QVRPQIGL---TFAAALRSFLRQDPDVIMVGEVRDPETAHIAVHAALTGHLVLTTLHTDT 411

Query: 231 ANQALERILHLVPKEQREQFLLDLSLNLKGVIAQQLLRD--KNGKGRHGVFEVLLNSPRI 288
           A  ++ R+L L      E FL  L   L+ VIAQ+L+R   +  K  H      L+S  +
Sbjct: 412 AAASVPRMLDL----GVEGFL--LKSTLRAVIAQRLVRQLCERCKRPH-----TLSSSDV 460

Query: 289 ADLIRRGELHELKATMARSQEVGMQTFDQALYQ--------LVVDDKISEQDALHSADSA 340
            D  R   L  LKA     + VG +    A Y+        L + D I E    H+  +A
Sbjct: 461 RDDPRYAAL-GLKAGETVYEPVGCERCGGAGYRGRIGVFEVLTLSDDIREMIDRHAGAAA 519

Query: 341 ND 342
            D
Sbjct: 520 LD 521