Pairwise Alignments

Query, 368 a.a., twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 585 a.a., type II secretion system protein E (GspE) from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 95.9 bits (237), Expect = 3e-24
 Identities = 89/282 (31%), Positives = 149/282 (52%), Gaps = 30/282 (10%)

Query: 3   LNQYLDGMLTHKASDLYITV---GAPILYRVDGELRAQGEALSVADVTALLHAMMDDARQ 59
           +N  L   +  +ASD++I        + YR+DG L  + EA   +   A++  +   AR 
Sbjct: 205 VNLILQRAVEQRASDIHIEPFESQLKVRYRIDGVLH-EAEAPPSSSSAAVISRVKIMARL 263

Query: 60  --AEFKQTREANFAVVRDSGR---FRVSAFFQRELPGAVIRRIETR-----IPT--FEEL 107
             AE +  ++    ++R  G+    RVS          V+R ++ +      P+  F+  
Sbjct: 264 DIAERRLPQDGRI-MLRIQGKELDLRVSTVPTSFGESVVMRLLDRQTINFDFPSLGFDGE 322

Query: 108 KLPEVLQNLAIAKRGLVLVVGATGSGKSTTM-AAMTGYRNQHRTGHILTVEDPIEFVHEH 166
           +L E L  L     G++LV G TGSGK+TT+  A++      R   I+TVEDP+E+  E 
Sbjct: 323 RLDEFLDVLE-RPHGILLVTGPTGSGKTTTLYTALSRLNTAERK--IITVEDPVEYQLEG 379

Query: 167 KRCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATL 226
              I  +  +GLD   +  AL++ +RQ PD+I+IGE+R  ET   A+  + TGHL ++TL
Sbjct: 380 INQIQVKPSIGLD---FAGALRSIVRQDPDVIMIGEMRDLETCRIAIQSSLTGHLVLSTL 436

Query: 227 HANNANQALERILHLVPKEQREQFLLDLSLNLKGVIAQQLLR 268
           H N+A  ++ R+L +      E +L+  ++N  G++AQ+L+R
Sbjct: 437 HTNSAAASITRLLDM----GVESYLIASTVN--GILAQRLVR 472