Pairwise Alignments

Query, 368 a.a., twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., Type IV pilus assembly ATPase component PilU from Pseudomonas sp. S08-1

 Score =  413 bits (1062), Expect = e-120
 Identities = 207/350 (59%), Positives = 271/350 (77%), Gaps = 2/350 (0%)

Query: 1   MELNQYLDGMLTHKASDLYITVGAPILYRVDGELR-AQGEALSVADVTALLHAMMDDARQ 59
           ME  + L  M+    SDL+IT G P   +V+G++       +S       +H++M++ ++
Sbjct: 1   MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVTKNPMSPEQTRETVHSVMNEQQR 60

Query: 60  AEFKQTREANFAV-VRDSGRFRVSAFFQRELPGAVIRRIETRIPTFEELKLPEVLQNLAI 118
            EF +  E NFA+  R  GRFRVSAF+QR L G V+RRIET IPT ++LKLPEVL+ LA+
Sbjct: 61  REFAENHECNFAISARGVGRFRVSAFYQRNLAGMVLRRIETNIPTIDDLKLPEVLKKLAL 120

Query: 119 AKRGLVLVVGATGSGKSTTMAAMTGYRNQHRTGHILTVEDPIEFVHEHKRCIVTQREVGL 178
            KRGLVL VGATG+GKST++AAM GYRN++ +GHI+++EDPIE++H+H+ CIVTQREVG+
Sbjct: 121 TKRGLVLFVGATGTGKSTSLAAMIGYRNKNTSGHIISIEDPIEYIHQHQSCIVTQREVGI 180

Query: 179 DTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERI 238
           DTES+EVALKN+LRQAPD+ILIGEIR+RETM+YA+ FAETGHL +ATLHANNANQAL+RI
Sbjct: 181 DTESFEVALKNTLRQAPDVILIGEIRTRETMDYAVAFAETGHLALATLHANNANQALDRI 240

Query: 239 LHLVPKEQREQFLLDLSLNLKGVIAQQLLRDKNGKGRHGVFEVLLNSPRIADLIRRGELH 298
           ++  P ++  Q  +DLSLNLK ++AQQL+   +GKGR  V EVL+N+P  ADLIR+GE+H
Sbjct: 241 INFFPPDRHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVH 300

Query: 299 ELKATMARSQEVGMQTFDQALYQLVVDDKISEQDALHSADSANDLRLMLK 348
           ELK  M RS E+GMQTFDQALY L    +I+ +DAL  ADSANDLRL++K
Sbjct: 301 ELKGLMKRSTELGMQTFDQALYNLYTQGEITYEDALLYADSANDLRLLIK 350