Pairwise Alignments

Query, 368 a.a., twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., general secretory pathway component, cryptic (NCBI) from Escherichia coli BW25113

 Score =  102 bits (255), Expect = 2e-26
 Identities = 90/284 (31%), Positives = 139/284 (48%), Gaps = 34/284 (11%)

Query: 3   LNQYLDGMLTHKASDLYITV---GAPILYRVDGELRA---QGEALSVADVTALLHAMMDD 56
           +N  L   +   ASD++I        I +R+DG LR      + L+   ++ +      D
Sbjct: 112 INAILSEAIKETASDIHIETYEKTMSIRFRIDGVLRTILQPNKKLAALLISRIKVMARLD 171

Query: 57  ARQAEFKQTREANFAVVRDSGRFRVSAFFQRELPGAVIRRIETRIPTFEELKLP------ 110
             +    Q    +  + R +   RVS      LP     R   R+     L+L       
Sbjct: 172 IAEKRIPQDGRISLRIGRRNIDVRVST-----LPSIYGERAVLRLLDKNSLQLSLNNLGM 226

Query: 111 -----EVLQNLAIAKRGLVLVVGATGSGKSTTMAAMTGYRNQHRTGHILTVEDPIEFVHE 165
                + L+NL     G++LV G TGSGKSTT+ A+    N     +ILTVEDP+E+  E
Sbjct: 227 TAADKQDLENLIQLPHGIILVTGPTGSGKSTTLYAILSALNTPGR-NILTVEDPVEYELE 285

Query: 166 HKRCIVTQREVGLDTE-SYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMA 224
                + Q +V    + S+   L+  LRQ PD++++GEIR  ET + A+  + TGHL ++
Sbjct: 286 G----IGQTQVNTRVDMSFARGLRAILRQDPDVVMVGEIRDTETAQIAVQASLTGHLVLS 341

Query: 225 TLHANNANQALERILHLVPKEQREQFLLDLSLNLKGVIAQQLLR 268
           TLH N+A+ A+ R+  +      E FL  LS +L G+IAQ+L+R
Sbjct: 342 TLHTNSASGAVTRLRDM----GVESFL--LSSSLAGIIAQRLVR 379