Pairwise Alignments

Query, 368 a.a., twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., type II secretion system protein E from Enterobacter asburiae PDN3

 Score =  101 bits (252), Expect = 4e-26
 Identities = 94/285 (32%), Positives = 138/285 (48%), Gaps = 36/285 (12%)

Query: 3   LNQYLDGMLTHKASDLYITV---GAPILYRVDGELRA---QGEALSVADVTALLHAMMDD 56
           +N  +   +   ASD++I        I +RVDG LR        L+   V+ +      D
Sbjct: 112 INAIMGEAVKEGASDIHIETFERTLSIRFRVDGVLRPVLQPARKLAPLLVSRIKVMSKLD 171

Query: 57  ARQAEFKQTREANFAVVRDSGRFRVSAFFQRELPGAVIRRIETRIPTFEELKLPEV---- 112
             +    Q    +  + R +   RVS      +P     R+  R+     LK P++    
Sbjct: 172 IAEKRLPQDGRISLRIGRKAIDVRVST-----IPSQYGERVVMRLLDKSNLK-PDINKLG 225

Query: 113 --------LQNLAIAKRGLVLVVGATGSGKSTTMAAMTGYRNQHRTGHILTVEDPIEFVH 164
                   L+ L     G++LV G TGSGKSTT+ A+    N H   +ILTVEDPIE+  
Sbjct: 226 LIDEELVKLKGLIERPHGIILVTGPTGSGKSTTLYALLSALNGHER-NILTVEDPIEYEL 284

Query: 165 EHKRCIVTQREVGLDTE-SYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCM 223
           E     V Q +V    + ++   L+  LRQ PD+++IGEIR  ET + A+  + TGHL M
Sbjct: 285 EG----VGQTQVNPRVDMTFARGLRAILRQDPDVVMIGEIRDGETAQIAVQASLTGHLVM 340

Query: 224 ATLHANNANQALERILHLVPKEQREQFLLDLSLNLKGVIAQQLLR 268
           +TLH N+A  A+ R+  +      E FL+  S  L GVIAQ+L+R
Sbjct: 341 STLHTNSAAGAITRLRDM----GLESFLIGSS--LLGVIAQRLVR 379