Pairwise Alignments

Query, 368 a.a., twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 497 a.a., Type II secretion system protein E from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score = 99.0 bits (245), Expect = 2e-25
 Identities = 94/283 (33%), Positives = 139/283 (49%), Gaps = 32/283 (11%)

Query: 3   LNQYLDGMLTHKASDLYITV---GAPILYRVDG---ELRAQGEALSVADVTALLHAMMDD 56
           +N  L   +   ASD++I        I +RVDG   E+   G  L+   V+ +   +M  
Sbjct: 121 INAMLAEAIKEGASDIHIETFEKSLVIRFRVDGTLHEMLRPGRKLASLLVSRI--KVMAR 178

Query: 57  ARQAEFKQTREANFAVVRDSGRFRVSAFFQRELPGAVIRRIETRIP-------TFEELKL 109
              AE +  ++   A++       V       +P A   R+  R+        T E L L
Sbjct: 179 LDIAEKRVPQDGRIALLLGGRAIDVRV---STMPSAWGERVVLRLLDKNQARLTLERLGL 235

Query: 110 PEVL----QNLAIAKRGLVLVVGATGSGKSTTMAAMTGYRNQHRTGHILTVEDPIEFVHE 165
            + L    + L     G+ LV G TGSGKSTT+ A     N H + +ILTVEDPIE++ E
Sbjct: 236 SQQLTAQLRQLLHKPHGIFLVTGPTGSGKSTTLYAGLQELNNH-SRNILTVEDPIEYMIE 294

Query: 166 HKRCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMAT 225
                     VG+   ++   L+  LRQ PD++++GEIR  ET E A+  + TGHL ++T
Sbjct: 295 GIGQTQVNTRVGM---TFARGLRAILRQDPDVVMVGEIRDTETAEIAVQASLTGHLVLST 351

Query: 226 LHANNANQALERILHLVPKEQREQFLLDLSLNLKGVIAQQLLR 268
           LH N A  A+ R+  +      E FL  LS +L GV+AQ+L+R
Sbjct: 352 LHTNTAVGAITRLQDM----GVEPFL--LSSSLTGVMAQRLVR 388