Pairwise Alignments

Query, 345 a.a., type IV pili twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., putative protein transport (VIMSS) from Escherichia coli BW25113

 Score =  301 bits (772), Expect = 1e-86
 Identities = 161/327 (49%), Positives = 217/327 (66%), Gaps = 3/327 (0%)

Query: 1   MDIAELLEFSVKHNASDLHLSAGVPPMVRIDGEVRKLGVPAFTHSDVHRLIFEIMNDAQR 60
           M++ E++  SVKHN SDLHL +  P   RI G   ++    F   DV  L+ E ++D QR
Sbjct: 1   MNMEEIVALSVKHNVSDLHLCSAWPARWRIRG---RMEAAPFDTPDVEELLREWLDDDQR 57

Query: 61  SEYEEKLEVDFSFELPNVGRFRVNAFHQARGCSAVFRTIPTVIPTLEQLDAPEIFSKIAN 120
           +   E  ++DF+  L    R R +AF Q  G S   R +P+  P LEQL AP +  ++  
Sbjct: 58  AILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGAPTVLPELLK 117

Query: 121 YEKGLVLVTGPTGSGKSTTLAAMVNYVNAHHNKHILTIEDPIEFVHSNNKCLINQREVHR 180
            E GL+LVTG TGSGKSTTLAAMV Y+N H + HILT+EDP+E+++++ +CLI QRE+  
Sbjct: 118 SENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYASQRCLIQQREIGL 177

Query: 181 DTHSFKNALRSALREDPDVILVGELRDQETISLALTAAETGHLVFGTLHTSSAAKTIDRI 240
              +F + LR+ALREDPDVIL+GELRD ETI LALTAAETGHLV  TLHT  AA+ ++R+
Sbjct: 178 HCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERL 237

Query: 241 IDVFPGSDKDMVRSMLSESLRAVIAQKLLKRVGGGRVACHEIMLATPAIRNLIREDKVAQ 300
           +D FP  +KD VR+ L+ SLRAV++QKL      GRVA  E+++ TPA+ NLIRE K  Q
Sbjct: 238 VDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQ 297

Query: 301 MYSIIQTGAAHGMQTMEQNAKQLIARG 327
           +  +IQTG   GM T +Q+ +  +  G
Sbjct: 298 LPHVIQTGQQVGMITFQQSYQHRVGEG 324