Pairwise Alignments

Query, 185 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 188 a.a., Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  198 bits (504), Expect = 4e-56
 Identities = 94/178 (52%), Positives = 133/178 (74%), Gaps = 5/178 (2%)

Query: 1   MNSLSFLINTLFDLYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGS 60
           MN+L+FL++T+ +LY MV++LR+W+Q AR DFYNPFSQF+VK TQP++GPLRR+IP +G 
Sbjct: 1   MNTLTFLLSTVIELYTMVLLLRVWMQWARCDFYNPFSQFVVKITQPIIGPLRRIIPPMGP 60

Query: 61  IDLATIVFAYVLCVLKFMALVLIASSGSVSFSADFLFLGLLSLIKAAGGLLFWVLLIRAI 120
           ID A+++ A++L V+K + L  +     ++F A      +L L+K  G L+FWVLL+ AI
Sbjct: 61  IDSASLLVAFILSVIKAIVLFKV-----ITFQAIIWIAAVLILLKTIGLLIFWVLLVMAI 115

Query: 121 LSWVSQGRSPIEYVFHQLTEPMLAPIRRIIPVMGGFDLSVLVLFIVLQFANFLMGDVI 178
           +SWVSQGRSPIEYV  QL EP+L+PIRRI+P MGG D S +VL ++L   N  + +V+
Sbjct: 116 MSWVSQGRSPIEYVLIQLAEPLLSPIRRILPAMGGIDFSPMVLVLLLYVVNMGIAEVL 173



 Score = 42.0 bits (97), Expect = 6e-09
 Identities = 18/82 (21%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 8   INTLFDLYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGSIDLATIV 67
           I  L    ++V+ +  W+   R+    P    +++  +P++ P+RR++P++G ID + +V
Sbjct: 102 IGLLIFWVLLVMAIMSWVSQGRS----PIEYVLIQLAEPLLSPIRRILPAMGGIDFSPMV 157

Query: 68  FAYVLCVLKFMALVLIASSGSV 89
              +L V+      ++ ++G++
Sbjct: 158 LVLLLYVVNMGIAEVLQATGNM 179