Pairwise Alignments

Query, 391 a.a., YggW family oxidoreductase from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  332 bits (851), Expect = 1e-95
 Identities = 183/390 (46%), Positives = 237/390 (60%), Gaps = 14/390 (3%)

Query: 5   PSLSLYIHIPWCVQKCPYCDFNSH-----AQKGE-IPEQEYLDALLQDLDRDIERYQLKG 58
           P LSLYIH+PWC++KCPYCDFNSH     A  GE +PE  YL+AL  DL   +       
Sbjct: 44  PPLSLYIHLPWCLKKCPYCDFNSHEWSATAAPGEALPETAYLEALRADLAASLPLIW--- 100

Query: 59  DPRLLHSIFIGGGTPSLISAEGIARLLQGVAERIAFKPEIEITMEANPGTIEAQRFAGYR 118
             R +HS+FIGGGTPSL S   I RLL  V   +  + + EIT+EANPGT E  RF  +R
Sbjct: 101 -GRTVHSVFIGGGTPSLFSPAAIDRLLGDVRAMLRLEADAEITLEANPGTFEKDRFRAFR 159

Query: 119 TAGVTRISIGVQSFEPEKLARLGRIHGQQEAVRAAQLAHQIGLNSFNLDLMHGLPDQTPE 178
            AGVTR+SIGVQSF    L  LGR+H + +A+ A + A Q   ++FNLDLM+ LP QT  
Sbjct: 160 DAGVTRLSIGVQSFNDAHLKALGRVHDRAQALAAVEEAAQ-AFDTFNLDLMYALPGQTLA 218

Query: 179 QALADLDQAIALNPPHLSWYQLTIEPNTLFYSKPPKLPDEDALWDIFELGHQKLSDAGYV 238
              AD+  A++  PPH+S Y LT+EPNT F   PP LP ED  WD+ +   +  ++AG  
Sbjct: 219 DCEADVRTALSFAPPHISIYHLTLEPNTYFAKYPPALPPEDEAWDMLDRITELTAEAGMR 278

Query: 239 QYEISGYSKPGYQCQHNLNYWRFGDYLGIGCGAHGKLSFADGRIVRTTKTKHPRGYLAAL 298
           +YE+S Y++ G+QC HNLNYW+FGDYLGIG GAH KLSFA  R+ R  + + PR Y+   
Sbjct: 279 RYEVSAYAREGHQCWHNLNYWQFGDYLGIGAGAHSKLSFAH-RVARPVRVREPRLYME-- 335

Query: 299 NNLAKAYLDSEQLVADQDKPFEFFMNRFRLIEPCPKADFTATTGLTIDVIRPTLDWALSE 358
             L    + S   V+ +  PFEF +N  RL +      F   TGL +  I P L  A  +
Sbjct: 336 RALVGNAVVSADEVSRKALPFEFMLNALRLKDGFTLLQFMERTGLPLSSIAPALAQAEQK 395

Query: 359 GYLSEDDQHWQITEKGKLFLNDLLEAFMAD 388
           G ++ D      TE+G  FL+DL E F+AD
Sbjct: 396 GLIARDATRVWPTERGFDFLSDLQELFLAD 425