Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  192 bits (487), Expect = 4e-53
 Identities = 122/367 (33%), Positives = 209/367 (56%), Gaps = 17/367 (4%)

Query: 179 ARFWSTAQWQLSLCVVIAV-AILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREF 237
           A+ +S+AQW +   +V+A+ A L L  +  R I   +G    +     + +A G + +  
Sbjct: 182 AQTYSSAQWIVGSIIVLALTATLLLAWLLTRSITAPLG----QALIVARTIASGDLSQPI 237

Query: 238 VIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTD------- 290
            +    E       Q+ ++LA + A+L+ ++  +       G  A+ ++ + +       
Sbjct: 238 AVSGKDEPA-----QLLTALATMQAQLQGTLRGISESAQQLGCAAEEMSSVMEQSTRDLQ 292

Query: 291 SQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLAT 350
           +Q       ATA+TEM+++ ++VA +A  +A  +  +D+ S+H    I  T+S+IQ L  
Sbjct: 293 AQNDEIEQAATAVTEMSAAVDEVAGNAVSSAEASQASDEDSKHGHYQISETISSIQNLVD 352

Query: 351 QLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 410
           ++  AS     L +  ++I+KVL+VI  IA QTNLLALNAAIEAARAGE GRGFAVVADE
Sbjct: 353 EVLGASNKAEGLAVQAQDISKVLEVIRGIAAQTNLLALNAAIEAARAGEAGRGFAVVADE 412

Query: 411 VRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSA 470
           VR+LA RTQ ST+EI+QMI  +Q+G++  ++ +    + +  ++Q + +A SAL  I +A
Sbjct: 413 VRSLAQRTQDSTEEIEQMITGIQQGTQGTVEALNSSAEQAGHTLQRANSAGSALEKITAA 472

Query: 471 LESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLAREL 530
           +  +S  +  IA+AA +Q  V+ D+ R +  I +  ++ +    ++  ++Q L++LA +L
Sbjct: 473 ISQISQRNLVIASAAEQQALVARDVDRSLVNIRDLSTQTAAGATQTSAASQELSRLAVDL 532

Query: 531 EQWAAHF 537
               A F
Sbjct: 533 NGLVARF 539