Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  193 bits (490), Expect = 2e-53
 Identities = 124/355 (34%), Positives = 198/355 (55%), Gaps = 12/355 (3%)

Query: 193 VVIAVAILSLL--LVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAPKE--SIYG 248
           +++   +L+L+  LVA   I   I    N+     Q VA G +          E   +  
Sbjct: 288 LLLLATVLALIFGLVAAWAITRQIVIPLNQTLQVAQRVASGDLSHNLTSMRQDELGQLQR 347

Query: 249 AVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELT----DSQQQSTAMIATAMT 304
           A+Q M+  L +L+  +   +    +++A A  +  ++ E T    +SQ+  T  +ATAM 
Sbjct: 348 AMQSMTVGLRELIGGISDGV----TQIASAAEQLSAVTEQTSAGVNSQKVETDQVATAMN 403

Query: 305 EMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDL 364
           EMA++  +VA +A + +     ADQQ++   K++   ++ I+ LAT++  ++ A+ DL  
Sbjct: 404 EMAATVQEVARNAEEASEAAVAADQQAREGDKVVGEAIAQIERLATEVGNSTVAMGDLKR 463

Query: 365 DVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKE 424
           +   I  VLDVI  +A+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ ST+E
Sbjct: 464 ESDKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEE 523

Query: 425 IQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATA 484
           I+++I  LQ G++     +      + SSV+    A SALA I   + ++ +M+ QIATA
Sbjct: 524 IEELIVGLQSGTQQVATIMDNSRGLTDSSVELPRRAGSALASITRTVSTIQAMNSQIATA 583

Query: 485 AAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
           A +Q+ V+++I R +  + +   + +    E+  S+  L +L   L+     F V
Sbjct: 584 AEQQSAVAEEINRSVLNVRDVSEQTAAASEETAASSTELARLGTHLQALVGRFRV 638