Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  173 bits (438), Expect = 2e-47
 Identities = 134/469 (28%), Positives = 235/469 (50%), Gaps = 25/469 (5%)

Query: 74  TRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLIQDVLRHQ 133
           T L+++    ++ YV + ++ +  V    DP+    + H+FK  KG  +G     +    
Sbjct: 197 TELVKSIKLGESGYVMLVEDGVVLV----DPR---NAAHNFKPLKG--LGAAYAQLAETP 247

Query: 134 SGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQWQLSLCV 193
            G       T    DG     ++    +P  GW     I   EV A   +   +  +L V
Sbjct: 248 QGS------TDVVIDGV--HYMANVWTSPGLGWRYIGLIEHREVMAEA-TRMTYLTALIV 298

Query: 194 VIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGR--IRREFVIKAPKES--IYGA 249
            + V I  L+  A  K+++   G+   V + +Q++AQG   +R E  ++   E+  + G 
Sbjct: 299 GVLVLIFGLIAAAFSKVIVKPIGQ---VSTGLQSIAQGEGDLRHELQVQGKDETAELAGW 355

Query: 250 VQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAMTEMASS 309
             +  +++  L+  +  +   L++        A ++ E    Q+++  +++TA  EM ++
Sbjct: 356 FNKFLAAIRQLIQHIGAASANLQNASKVNSEVAHNMNEAAGRQREAVELVSTAFNEMVAT 415

Query: 310 ANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNI 369
           AN+VA S    A + +   ++    ++ I  T  N+  L  +L  +S A+ +L+   ++I
Sbjct: 416 ANEVARSCSGAAESAENGHRRVAEGKQQIEVTTDNVNRLGRRLTESSQAMVELEAGSRSI 475

Query: 370 AKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMI 429
            ++L  I  IAEQTNLLALNAAIEAARAG+QGRGFAVVADEVR LA RT  ST EI+Q++
Sbjct: 476 NQILGTIRAIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALAKRTSDSTGEIEQLL 535

Query: 430 HNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAAAEQT 489
             L+  ++   Q +  C   S++SV   E+A  +   I +++  +   + QI+ AA EQ 
Sbjct: 536 GTLENKTQEVTQKMGSCLDLSRASVSSIESARDSFEGIQTSVNEIRDQNLQISAAAEEQH 595

Query: 490 QVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFE 538
            V+++I R I  I +    +  +   + + +  L+ L+ EL      F+
Sbjct: 596 SVAEEINRHIQQIYDEARLVESLANSAQDDSGRLSNLSDELNGLVGRFK 644