Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  212 bits (540), Expect = 3e-59
 Identities = 161/539 (29%), Positives = 261/539 (48%), Gaps = 22/539 (4%)

Query: 13  IILAALLALTATGLWTLRVASN---LDNKARVTELFNSAYSILTEVEKLAQEGKMSEPEA 69
           I++ A+L L A G+  L+   +      + +   +  +A  ILT    L   G M+   A
Sbjct: 16  ILIVAVLMLLALGMLMLKQIHDDLYQAKRQQTQHVVQTASGILTFYHGLETTGVMTREAA 75

Query: 70  KALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLIQDV 129
           +  A   +R   Y  ++Y ++ D     +  P +P+L   +    +D  G +V      +
Sbjct: 76  QKQALSAVRGLRYDHDDYFWINDLTPVMIMHPANPKLDGQNLSAIRDPDGFAVFNEFVIL 135

Query: 130 LRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQWQL 189
            + +   +V Y W +  A+  + +   I    P WGW++G+G+  ++V A F S+  W+ 
Sbjct: 136 AKAKGAGIVNYRWPKPGAEAPVAKTSYIQLFEP-WGWIIGSGVYVDDVQAEF-SSQVWKA 193

Query: 190 SLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAPKESIYGA 249
           S  + +A+A++  LLV+     LI       +++AV A+         + ++        
Sbjct: 194 SF-IGLAIALVMALLVS-----LIARSIVRPLQAAVNAMGNIASGESDLTRSLDTHGQDE 247

Query: 250 VQQMSSSLADLVAKLEQSMV-------ALRSELAGAGTRAKSIAELTDSQQQSTAMIATA 302
           V Q+S       AKL Q +        AL       G+ A    + +  Q Q   ++ATA
Sbjct: 248 VTQLSRHFNSFTAKLRQVVGQLQVCANALGQSSQELGSNATQAHDRSQQQSQQMELVATA 307

Query: 303 MTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADL 362
           + E+      VA +A   A     A  Q+Q  Q  I +++  I  L+  +  A   +  L
Sbjct: 308 INEVTYGVQDVAKNAEHAASEMRDAQAQAQQGQVNIDSSLQQIDQLSGTISQAVEVIRTL 367

Query: 363 DLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTST 422
             +   I  VL+VI  IA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RTQ ST
Sbjct: 368 SAESTQIGSVLEVIRSIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQRTQKST 427

Query: 423 KEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIA 482
            EIQ MI  LQ  S  A++ I      SQ +++++  A ++L  I  +L +++ ++  IA
Sbjct: 428 AEIQGMIERLQGHSEAAVKVISDSHSASQMTIEQAGQAGASLTAIGESLRNLNGLNASIA 487

Query: 483 TAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQT--LTKLARELEQWAAHFEV 539
           +A  +Q  V +DI +  N+ E +G   S  +    +S  +  L  L+ +L+     F+V
Sbjct: 488 SATLQQAHVVEDINQ--NVTEAAGLSHSTALAAEQSSVASAHLRGLSEQLDGLLRQFKV 544