Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  180 bits (457), Expect = 1e-49
 Identities = 144/473 (30%), Positives = 229/473 (48%), Gaps = 32/473 (6%)

Query: 74  TRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLIQDVLRHQ 133
           T L+RN    D+ Y+ + + N   +  P D +      H+FK      +G    ++ +  
Sbjct: 198 TELVRNIKLGDSGYLMLVEGNGNVLVDPSDAK------HNFKPLA--DLGPNYAELAKRG 249

Query: 134 SGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARF----WSTAQWQL 189
            G       TQ + DG       ++ K   W ++    I  +EV A      W  A    
Sbjct: 250 DGV------TQIEIDGVAYMANMVSSKDLGWRFI--GLIKRDEVMAGATRLTWLIAAIAA 301

Query: 190 SLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGR--IRREFVIKAPKE--S 245
            L +V A+   S   V +R I  +  G        +Q +A+G   + R+  ++   E  S
Sbjct: 302 VLALVFAIVGASFASVIVRPIRGVADG--------LQEIAEGEGDLTRQLKVQGKDETAS 353

Query: 246 IYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAMTE 305
           + G   Q  S +A LV ++  +   L+S  A     A ++ +    Q+++  +++TA  E
Sbjct: 354 LAGWFNQFLSMIAQLVQRIGNASSDLQSAAADTREVAHNMNQAAGRQREAVELVSTAFNE 413

Query: 306 MASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLD 365
           M ++AN+VA S    A + D+  +     Q+ I     ++  L+  LQ ++  +  L+ D
Sbjct: 414 MVATANEVARSCSAAATSADEGYRDVHDGQQHIGEATGSVLKLSEDLQRSTQTMQQLEQD 473

Query: 366 VKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEI 425
            KNI  +LD I  IAEQTNLLALNAAIEAARAG+QGRGFAVVADEVR LA RT  ST EI
Sbjct: 474 SKNINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALARRTADSTGEI 533

Query: 426 QQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAA 485
             ++ NL   ++   Q +Q     S +SV+  + A  +   I  +++S+   + QIATAA
Sbjct: 534 DSLLGNLARRTQEVTQQMQGSLLVSHTSVERIQQARDSFDKIRGSVDSIRDQNTQIATAA 593

Query: 486 AEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFE 538
            EQ QV+++I R I  I      +      +   +  LT ++ +L+     F+
Sbjct: 594 EEQHQVAEEINRHIAQIHADAQLVEGFAHSAQTGSGRLTDISGQLKGLVGRFK 646