Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  218 bits (555), Expect = 5e-61
 Identities = 159/561 (28%), Positives = 283/561 (50%), Gaps = 24/561 (4%)

Query: 1   MKLKTQAYLLSAIILAALL---ALTATGLWTLRVASNLDNKARVTELFNSAYSIL----- 52
           M+L  +A +LS  ++  LL    ++ T +W L+  +  + +     L N A + L     
Sbjct: 1   MRLSLKAKVLSLAVVPVLLFAVVISLTTVWILQGQARNEVEETRQRLLNDAKATLQSYVE 60

Query: 53  ---TEVEKLAQEGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDT 109
              + ++ L       +  A+A   +L+ N  Y  + Y +  D     +     P     
Sbjct: 61  VAMSTIKPLYDAAAPGDTAARAQVVKLLSNTSYGKDGYFFGYDSETIRLFKGNSPDGVGK 120

Query: 110 SFHDFKDGKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVG 169
           SF D +D  G  V R +  V +  +  L +Y+ TQ      +  K+      P W  V+G
Sbjct: 121 SFKDNRDPNGVYVNRDLVKVGKDGTHYL-QYSSTQP-GQTELVPKMGYTEYLPKWDMVIG 178

Query: 170 TGIGFNEVNARFW---STAQWQLS--LCVVIAVAILSLLLVAIRKILLI--IGGEPNEVR 222
           T +  + + A+     +  Q ++   L  ++ VA++ LL++A   +LL   I    + ++
Sbjct: 179 TSVNLDGIEAQVAVVEAKVQKRMEGVLLSILGVAVVLLLVIAAVGMLLANTILRPLHLMK 238

Query: 223 SAVQAVA--QGRIRREFVIKAPKE--SIYGAVQQMSSSLADLVAKLEQSMVALRSELAGA 278
           + +  +A  +G + R   I +  E   + GA  +    +  LV ++ +    L   ++  
Sbjct: 239 ANLDDIAAGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITEMTSQLTGLVSQV 298

Query: 279 GTRAKSIAELTDSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLI 338
             +A+   +  + Q+  T  +ATA+ +M+S+A +VA SA+  +    Q D + Q  ++++
Sbjct: 299 SDQAQRSEQAMERQRHETDQVATAINQMSSAAQEVARSAQGASVAAQQTDAEGQAAKRVV 358

Query: 339 HNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAG 398
             +++ I  L   ++++  ++  L  DV +I  VL VI  IAEQTNLLALNAAIEAARAG
Sbjct: 359 DGSIAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAAIEAARAG 418

Query: 399 EQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESE 458
           E GRGFAVVADEVR LA RTQTST+EIQ MI  LQ G+  A++ ++        +  ++ 
Sbjct: 419 EAGRGFAVVADEVRALASRTQTSTQEIQGMIDRLQTGTEAAVEAMRRSSDAGDGTSAQAN 478

Query: 459 NAASALALIVSALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHN 518
            A ++L  +   + +++SM+ QIA+AA EQT V+++I R ++ I  +   ++        
Sbjct: 479 EAGASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQ 538

Query: 519 STQTLTKLARELEQWAAHFEV 539
           ++++L +L + L Q    F +
Sbjct: 539 TSRSLAELGQRLGQLVGQFRI 559