Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  192 bits (487), Expect = 4e-53
 Identities = 131/366 (35%), Positives = 195/366 (53%), Gaps = 15/366 (4%)

Query: 178 NARFWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREF 237
           +A FW  A   +S  V + +   +    +I+K L  I  E       +  +A+G + R  
Sbjct: 305 SANFWIMAVSAISAAVALVIGYTTAR--SIQKPLQKINHE-------LAYMARGDMTRR- 354

Query: 238 VIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELT----DSQQ 293
            I  P    +GA+ +    LAD   +L   + A    L    +R+  I+E        Q+
Sbjct: 355 -INYPTRCEFGALSRSIDILADKTGELLSQINAGSRHLVNEASRSAEISERAMARVQEQK 413

Query: 294 QSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQ 353
             T  +A A+TE+  SA +VA S        D+AD +++  ++ +  T    + LA+ ++
Sbjct: 414 SQTDQVAAAITELEVSATEVARSTDGAKDEVDRADAEAKQGRQKVATTRRITEQLASDME 473

Query: 354 TASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRN 413
           +A      L     NI  +LDVI  IAEQTNLLALNAAIEAARAG+ GRGFAVVADEVR 
Sbjct: 474 SAVGITHKLGEFSNNIGSILDVIRGIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRA 533

Query: 414 LAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALES 473
           LA RTQTST+EIQ MI NLQE S+  ++ +    + +++ V+++    SAL  I   + +
Sbjct: 534 LATRTQTSTEEIQHMIENLQESSKQVVEVMGRSQEQTRACVEQTREMDSALQSIADRMGA 593

Query: 474 VSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQW 533
           +  M+ Q+A AA EQ  VS  +A  +  I E   +  R   ES +S++ L  LA + +Q 
Sbjct: 594 IKEMADQVAHAAQEQIVVSQSVAHHVTGIAEVAHETEREARESASSSEVLADLAAKQQQL 653

Query: 534 AAHFEV 539
            AHF+V
Sbjct: 654 IAHFKV 659