Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  239 bits (609), Expect = 3e-67
 Identities = 179/545 (32%), Positives = 298/545 (54%), Gaps = 30/545 (5%)

Query: 7   AYLLSAIILA------ALLALTATGLWTLRVASNLDNKARVTELFNSAYSILTEVEKLAQ 60
           +Y L+AI++       +LL ++A  L    VA   + +AR+  +  S  S +  + +   
Sbjct: 10  SYKLAAIVIVGIVGFLSLLFISANALKENLVA---EREARLKAVIQSTLSQVAYLNQTLP 66

Query: 61  EGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSF-HDFKDGKG 119
           + +  E +AKAL   L     +  N Y++V DE+   V  P+   L      +  KD +G
Sbjct: 67  KEQAQE-QAKALINALR----FDGNNYMFVIDESRYTVVHPIRQDLVGQQMGNPGKDTEG 121

Query: 120 NSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNA 179
                +I      Q G L+ Y W  +Q  G+  +KLS       WGW++G+G+  +++  
Sbjct: 122 QFWFTMIDLARNGQQGSLI-YPWKNQQ--GNPADKLSFVNGFAPWGWILGSGMLLDDIEH 178

Query: 180 RFWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEP-NEVRSAVQAVAQGRIRREFV 238
                A +Q  L +  A  I++L+++ +  ++     +P + ++  ++ VAQG +  +  
Sbjct: 179 -----AVYQQFLRMGFATLIVTLVMIGLGVVISRAVIQPLDTIKDVMKKVAQGDLTAQIP 233

Query: 239 IKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTD----SQQQ 294
           +   K+ +    Q++++S+A +   L +S V   S +A A  R  S AE T     SQ+ 
Sbjct: 234 VLG-KDELGIVAQRINNSIAAVHDALVES-VQSASSVAEAAIRIASSAEETSQAVVSQRD 291

Query: 295 STAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQT 354
             + +ATAM +M ++   VA  A DTA +T  A +++    K +H++V +I+ L+ +L  
Sbjct: 292 QLSQLATAMNQMTATVADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGV 351

Query: 355 ASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNL 414
           A+  V  L   V  I++V  VI  I+EQTNLLALNAAIEAARAG+QGRGFAVVADEVRNL
Sbjct: 352 ATDQVNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNL 411

Query: 415 AGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESV 474
           A RT  ST EIQ MI+ LQ+ + +    +Q     + +SV  +ENA S L+LIV+ ++ V
Sbjct: 412 ASRTHHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHV 471

Query: 475 SSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWA 534
           S  + QIATAA EQ+ V++++ R ++ I ++  ++S+        ++ L  L+R+L+Q  
Sbjct: 472 SDKATQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLDQKL 531

Query: 535 AHFEV 539
             F++
Sbjct: 532 TAFKL 536