Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  241 bits (615), Expect = 5e-68
 Identities = 160/545 (29%), Positives = 281/545 (51%), Gaps = 13/545 (2%)

Query: 1   MKLKTQAYLLSAIILAALLALTATGLWTLRVASNLDNKARVTELFNSAYSILTEVEKLAQ 60
           + ++ + +LL+ +IL  L    A  +   R    L+ + +   L  SAY++L    + A 
Sbjct: 19  LSIRNRLFLLTVVILVLLAIPFAIMVKDYRHDLMLEKQVQTQHLVESAYTLLEHYAQQAT 78

Query: 61  EGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGN 120
           +G ++  +A+  A + +    Y  N+Y ++ D     V  P+ P L+      FKD  G 
Sbjct: 79  QGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNGKDLRSFKDPNGK 138

Query: 121 SVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNAR 180
           ++   + +V +     +VEY W +  A+  ++ K+S  +    WGW++GTGI  ++VNA 
Sbjct: 139 ALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVD-KVSYVKLFKPWGWIIGTGIYVDDVNA- 196

Query: 181 FWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGR--IRREFV 238
                  +LS  +V  V  L +L+V    I   I     E  + ++ +AQG   + R+  
Sbjct: 197 ---LVMQRLSSILVWVVGTLLVLIVLASLIGRSITQPCEETLATLKNIAQGEGDLTRQLT 253

Query: 239 IKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDS----QQQ 294
           +    E     + Q  +   + +  + Q +  +   + G+      +A+   S    Q Q
Sbjct: 254 VTGKDE--LAQIAQAFNLFTNKIRHIIQEITPITESVTGSADELTQVAQSASSKAYDQHQ 311

Query: 295 STAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQT 354
           +   +A+AM ++ +S  +VA SA         A+Q +   +++I  T + +Q L  QL  
Sbjct: 312 AVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMITLTSTQMQSLRDQLTR 371

Query: 355 ASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNL 414
                  L  + ++++ VL+VI  +AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L
Sbjct: 372 TEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTL 431

Query: 415 AGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESV 474
           A RTQ ST EI+Q+I  LQ+ +++  Q++    Q S+ + Q++E A   L  I + ++++
Sbjct: 432 ATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAEQAQQMLNEIEAQIKTI 491

Query: 475 SSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWA 534
            S +  IA A+A+Q++ +D+I R +  I E  ++ S    +   +++ L +  + L +  
Sbjct: 492 LSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAAASEQLMENGQHLARSL 551

Query: 535 AHFEV 539
           A F++
Sbjct: 552 AVFKI 556