Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  233 bits (595), Expect = 1e-65
 Identities = 162/546 (29%), Positives = 271/546 (49%), Gaps = 15/546 (2%)

Query: 1   MKLKTQAYLLSAIILAALLALTATGLWTLRVASNLDNKARVTELFNSAYSILTEVEKLAQ 60
           + +  + +L+  + +  L  L+AT L  L          +   +  +A  IL+  + L  
Sbjct: 6   LSISRRLWLILVVSVLMLFVLSATLLRQLHNDLYQAKAEKTMHVVQTASGILSFYQGLEA 65

Query: 61  EGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGN 120
            G M+   A+  A + +++  Y  ++Y ++ D     +  P + +L        KD  G 
Sbjct: 66  AGGMTREAAQQQALKEIKSLRYSQSDYFWINDLRPVMIMHPTNAKLEGQDLSTIKDPDGF 125

Query: 121 SVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNAR 180
           +V   +  +++ Q   +V Y W +  A   ++ K S  +    WGW++G+G+  ++V A 
Sbjct: 126 AVFNEMVTLVKAQGAGMVNYRWPKPGASEPVK-KTSYVQLFQPWGWILGSGVYVDDVAAE 184

Query: 181 FWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIK 240
           F  T  W   + +   V I+ LLLV I + ++        +R+AV A+A        + +
Sbjct: 185 F-KTQLWNAGMFIAGIVLIMVLLLVTIVRSIV------RPLRAAVGAMASIASGESDLTR 237

Query: 241 APKESIYGAVQQMSS-------SLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQ 293
             +      + ++ +        L ++V +L+ S VAL       G+ A+     ++ Q 
Sbjct: 238 TLETHGNDEITELGTHFNAFVAKLRNVVGQLQHSAVALGQASTDLGSDAEQAQSRSEQQS 297

Query: 294 QSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQ 353
           Q   ++ATA+ E+      VA +A   A     A+ Q+Q  Q  I N++  I+ L++ + 
Sbjct: 298 QQMDLVATAVNEVTYGVQDVAKNAEHAASEMRDAESQAQQGQINIDNSLRQIEHLSSTIG 357

Query: 354 TASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRN 413
            A   +  L  +   I  VL+VI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 
Sbjct: 358 QAVQVMQSLASESTQIGSVLEVISSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRL 417

Query: 414 LAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALES 473
           LA RTQ ST EIQ MI  LQ+ S  A++ I    ++SQ +++++  A  +L  I  AL +
Sbjct: 418 LAQRTQKSTAEIQSMIERLQKHSDAAVKVIGDSSRSSQLTIEQANQAGQSLTSISQALRN 477

Query: 474 VSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQW 533
           ++S++  IA+A  +QT V DDI + +    +     +    +S +++  L  L+ EL   
Sbjct: 478 LNSLNASIASATLQQTHVVDDINQNVTQAAQLSQSTALAAEQSTSASLHLRGLSEELNTL 537

Query: 534 AAHFEV 539
              F V
Sbjct: 538 LKQFRV 543