Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  220 bits (560), Expect = 1e-61
 Identities = 165/537 (30%), Positives = 260/537 (48%), Gaps = 18/537 (3%)

Query: 13  IILAALLALTATGLWTLRVASN--LDNKARVTE-LFNSAYSILTEVEKLAQEGKMSEPEA 69
           I++ A+  L   GL  LR         KA  T  +  +A  +L   + L   G +S   A
Sbjct: 16  ILVVAVAMLVVLGLLMLRQIHGDLYQAKAEKTRHVVQTAAGVLAYYQGLEAAGTLSREAA 75

Query: 70  KALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLIQDV 129
           +  A +++R   Y  ++Y ++ D     +  P +P+L D      +D  G +V   +  +
Sbjct: 76  QQQALQVVRALRYDHDDYFWINDLGPKMIMHPANPKLDDQDLSAIRDPDGFAVFNEMVAL 135

Query: 130 LRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNARFWSTAQWQL 189
            R Q    V Y W +  A   + +   I    P WGW++G+G+  ++V A F    Q + 
Sbjct: 136 ARQQDAGPVNYRWPKPGASEPVAKTSYIQLFKP-WGWIIGSGVYVDDVQAEF--ARQLRD 192

Query: 190 SLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQA---VAQGR--IRREFVIKAPKE 244
           +  V + +A+L  L+V     +LI       ++ AVQA   +A G   + R        E
Sbjct: 193 ASLVGVGIALLMALVV-----MLIARSIARPLQEAVQAMGNIASGESDLTRRLDTHGSDE 247

Query: 245 SIYGA--VQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATA 302
             +      + +  L  +V +L+ +  AL       G  A +  + +  Q      +ATA
Sbjct: 248 ITHLGEHFNRFNGKLQGVVGQLQGAAHALAQSAGHVGDNAGAAQQRSAQQSLQMDQVATA 307

Query: 303 MTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADL 362
           + E+  +   VA +A   A     A QQ  H Q+ IH +++ I  L+  +  A   + DL
Sbjct: 308 VNEVTYAVQDVAKTAEQAAGEMRTAQQQVTHGQQAIHGSLAQIDRLSLTIDEAVQVIRDL 367

Query: 363 DLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTST 422
                 I  VLDVI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA RT  ST
Sbjct: 368 AGHSTRIGGVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQRTAQST 427

Query: 423 KEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIA 482
            EI  MI +LQ  S  A++ I    + S+ +V+++  A ++L  I   L ++++++  IA
Sbjct: 428 AEIHTMIEHLQSQSDAAVKAIDTSSEASRQTVEQAREAGASLDAINQVLNNLTALNASIA 487

Query: 483 TAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEV 539
           +A  +Q+ V ++I R +        + +    +S ++   L +L+ ELEQ    F V
Sbjct: 488 SATLQQSHVVEEINRNVLDTAGLSQQTADAARQSSDAGVALGRLSEELEQLLRQFRV 544