Pairwise Alignments

Query, 541 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  202 bits (513), Expect = 3e-56
 Identities = 126/363 (34%), Positives = 209/363 (57%), Gaps = 12/363 (3%)

Query: 185 AQWQLSLCVVIAVAILSLL--LVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFVIKAP 242
           A+ + +  ++I  + L+LL  L+A   I  +I      V    Q +A G +  +  +   
Sbjct: 153 AELKKNTVLIIGSSALALLVGLLAAWVITRLIVAPLRSVIRVAQQIAAGDLTAKVEVTRR 212

Query: 243 KE--SIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTD----SQQQST 296
            E   +  A+QQM++ L  +V+ L+  +      LAG+     ++ E T+    SQ++ T
Sbjct: 213 DEMGQLMLAMQQMAAGLGTIVSGLQAGI----ERLAGSAQSLSAVTEQTNLEVNSQKEET 268

Query: 297 AMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTAS 356
             +ATAM +M ++ + VA +A + A     AD + +  Q+++  +++ I+ LA    +AS
Sbjct: 269 EQVATAMNQMTATVHDVARNAEEAALAAQTADDKVESGQQVVRQSMARIEQLADSATSAS 328

Query: 357 TAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAG 416
           +++  L  +++NI  VL+VI  +AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA 
Sbjct: 329 SSIESLSAEIQNIGTVLEVIKSVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAR 388

Query: 417 RTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSS 476
           RTQ ST+EI++++  L+  +++++Q I+  G+  + +V ++    SAL  I +A+  +  
Sbjct: 389 RTQQSTEEIERLVSALRAAAQSSVQQIRSSGELVKLAVSDALQTESALGSIAAAVSLIQQ 448

Query: 477 MSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAH 536
           M+ QIA AA EQ+ V+++I R +  I  S    S  +  +  S+  L +L  EL     H
Sbjct: 449 MNQQIAAAAEEQSSVAEEINRSVTQIRASADHSSVAMRGNAASSVELAQLGGELRSMVGH 508

Query: 537 FEV 539
           F +
Sbjct: 509 FRL 511