Pairwise Alignments

Query, 787 a.a., LPS assembly protein LptD from Vibrio cholerae E7946 ATCC 55056

Subject, 790 a.a., LPS assembly protein LptD from Rhodanobacter sp000427505 FW510-R12

 Score =  250 bits (638), Expect = 2e-70
 Identities = 198/769 (25%), Positives = 320/769 (41%), Gaps = 87/769 (11%)

Query: 10  RTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQ----PEPTNPGQ-------- 57
           R  LA + + ALF  Q  A+AS        P  + C +      P P N           
Sbjct: 8   RRLLAVAAALALFGGQ--ADASTPPAPPAAPTNQACPLGSFHCAPRPLNYAMCRPNALLE 65

Query: 58  ---------------QPINVEADKLEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQEN 102
                           P  V+A  +++ N      SG V + +  +++ A+ +  + Q  
Sbjct: 66  FYDPSLGKDASLRETSPTLVQAQHVDSSNQSVYHLSGEVKLQRADQQLQAERIDYNDQNT 125

Query: 103 VVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVY 162
              A GNV++ +      ++    +      T  + RYQ L   G G A           
Sbjct: 126 DYDARGNVRYQEAGQLLAASSMRGNTEASRGTANDVRYQMLDARGNGTASQGQMLDAQHS 185

Query: 163 EIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDT 222
                + ++C  G + W  RA SI +++   +    N  + + NVP  YLPY + P+ D 
Sbjct: 186 RYSQATYSTCDVGHHLWEFRAKSITINKETGVGVARNATMRLGNVPFLYLPYFSFPVDDR 245

Query: 223 RKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGA 282
           RKTGFLYPT  + SR+GY    P Y NLAP YD      Y   RG  L   FRYLT    
Sbjct: 246 RKTGFLYPTVGHTSRSGYEISTPYYLNLAPNYDATLDPRYYSARGAMLAGEFRYLTAGSR 305

Query: 283 GQIKSEYLADDQ-----LHTELGD-RWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLD 336
           GQ+  EY+ DD+     L    GD R+   +  +    + W+F   Y+  SD +Y  D  
Sbjct: 306 GQLNVEYVPDDRGGNDGLAVTKGDSRYLVNFSDSTQLWRGWQFVGSYNHASDSSYLYDYG 365

Query: 337 SGVGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAP 396
             + +     L            W+++     +Q +    T   LPY+ +P   ++   P
Sbjct: 366 DALSHSAVYTLASNAAIMGGGKWWNASFGGTIYQNVNPFVTDYGLPYKQLPYAKFSLDVP 425

Query: 397 ETMKYLDLDLVSHVSRFETDARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQ 456
              ++L++ + S    F     G     R  I P L   F ++   W    R+   Y   
Sbjct: 426 -LSRWLEVGVDSSAVAFR--KAGFVEGQREDIYPYLAADFGSS--AWFVRPRLGYRYTAY 480

Query: 457 DLDKT--------------TDAKLEESVTRVIPEIRSVAGIVLERDTVLL-DDYTQTLEP 501
            LD +              T    ++S +R +P +   +G+V +R T L    YTQTLEP
Sbjct: 481 QLDSSYQNYGYGGQLGSGATSPFNQKSPSRSMPIVSLDSGLVFDRSTTLFGSSYTQTLEP 540

Query: 502 KIQYLYVPEKYQDNIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDSN 561
           ++ YLYVP + QDN+ L+D+ ++  DY+ LF + ++SG DR   AN ++   ++R  D  
Sbjct: 541 RLYYLYVPYRKQDNLPLFDTNVMSFDYWQLFSTNQFSGADRQMDANNLTAALTSRLLDDG 600

Query: 562 YKERLNIAFGQIFYLDSKLNPSNKNPDSTSDKTSYSAWAVEMDFNFADYLFYHGGIQYDI 621
             ER++ + GQI Y   +     K   +   ++SY A   ++D   ++        Q+  
Sbjct: 601 GVERVSASIGQIHYFSPQ-----KVLGTDWVRSSYVA---QLDVQLSERWRLGSSYQWSP 652

Query: 622 DSQAVQLGNSTLEYRV-ASGYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQAGILA 680
           +++   L +  L+ R+   G +  +YRY                     R  + Q     
Sbjct: 653 NTRLTDLASVQLQRRIRTDGVLNFSYRY--------------------RRGLLEQYNASV 692

Query: 681 GYQLSRKWSASGQYYYDLTTDEALEWLANLTYTSDC---WYVGFTYSNQ 726
            Y +S +W   G + Y +   E+++ LA + Y S C     VG +Y NQ
Sbjct: 693 VYPVSERWRLVGAWTYSVKDRESVDALAGVEYDSCCVSLRLVGRSYVNQ 741